Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41670 896 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 887 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT3G02360 751 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT3G25530 47 / 1e-05 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135600 [exp] 962 / 0 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.008G113700 [exp] 749 / 0 AT3G02360 874 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108920 [exp] 748 / 0 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 747 / 0 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 739 / 0 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.014G197900 [exp] 52 / 3e-07 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G211500 [exp] 50 / 2e-06 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 44 / 0.0003 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 43 / 0.0003 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032341 [exp] 899 / 0 AT5G41670 893 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10024725 [exp] 895 / 0 AT5G41670 896 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10034102 [exp] 750 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10003043 [exp] 750 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10029098 [exp] 72 / 5e-15 AT3G02360 85 / 2e-20 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10012301 [exp] 48 / 7e-06 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10001349 [exp] 48 / 1e-05 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00393 [poplar] [flax] 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G095800.1 pacid=42793602 polypeptide=Potri.001G095800.1.p locus=Potri.001G095800 ID=Potri.001G095800.1.v4.1 annot-version=v4.1 ATGGACGCCTCTACTCTTTCACGCATAGGCCTAGCCGGTCTAGCCGTGATGGGTCAGAACTTAGCCCTAAACATTGCTGAAAAAGGTTTCCCAATTTCAG TCTACAACAGAACCACCTCCAAAGTCGACGAAACCCTTCACCGTGCCCAATCCGAAGGCCCATTTCCTTTAACTGGTCAGTACTCCCCTCGTGATTTTGT TCTCTCAATCCAACGCCCCAGATCCATCATTATCTTGGTCAAAGCTGGAAACCCTGTTGACCAAACGATTTCTGCTTTGACCGAGTTCATGGAGCCTGGT GATACTATCATCGATGGCGGGAATGAGTGGTATCAGAATACTGAGAGGAGGATTCAAGAAGTGGGAGATAAAGGGATTCTTTATTTGGGTATGGGGGTTT CGGGTGGAGAAGAAGGTGCACGACATGGGCCTTCGTTGATGCCTGGTGGGTCTTTGGAGGCGTATAATAATATTGAGTCTGTTTTGAAGAGTGTTGCCGC TCAAGTTGATGATGGGCCTTGTGTTACGTATATTGGTGAAGGGGGTTCTGGCAATTTTGTTAAAATGGTTCATAATGGGATTGAGTATGGAGATATGCAG TTGATTTCGGAAGCCTATGATGTTTTGAAGAATGTTGGTGGGCTTTCTAATGGCGAATTAGCTGAGATTTTCGGGGAGTGGAATAGAGGGGAGTTGGAGA GTTTTTTGATTGAGATTACGAGTGATATTTTTAAGGTTAAGGATGATTTGGCTGACGGGGATCTGGTTGATAAGATATTGGATAAAACTGGAATGAAAGG GACTGGGAAATGGACTGTCCAGCAAGCTGCTGAGTTGTCTGTTGCTGCGCCTACAATTGCTGCTTCGTTGGATTGTAGGTATTTGAGTGGGTTGAAGGAG GAGAGGGAGAGTGCGGCCGAGATTTTGGAAAAAGCTGGCTTGAAGGAGGAAATGGGGAGTGTTAAGAGTGAGATTGACAAGAAGAGGTTGATTGATGATG TGAGGCAAGCATTGTATGCGTCGAAGATTTGCAGTTACGCTCAGGGGATGAATTTGTTGAGGTCTAAGAGTGTTGAGAAAGGGTGGGATTTGAATTTGGG TGAGTTAGCTAGGATTTGGAAAGGTGGATGCATTATTAGGGCTGTGTTTTTGGATAGGATTAAAAAGGCTTACCAGAGGAATCCTAGCTTGGCTAGTTTA GTTGTGGACCCGGAATTTGCGAGGGAGATGGTGCAGAGGCAGGCGGCATGGAGGAGAGTCGTGGGGCTGGCGATTTCAGCTGGAATTAGCACTCCAGGGA TGTGTGCTAGTCTTGCATATTTTGATACTTACAGGCGTGCTAGGCTGCCAGCAAACCTTGTCCAGGCTCAGAGGGACTTGTTTGGGGCTCATACTTATGA GAGGACCGATCGTCCAGGGGCATTTCATACTGAGTGGACAAAGCTTGCTCGTAAGAGCAATGCTGGTTTTGGAGCTTTCAATTGA
AA sequence Show only first row Show all	>Potri.001G095800.1 pacid=42793602 polypeptide=Potri.001G095800.1.p locus=Potri.001G095800 ID=Potri.001G095800.1.v4.1 annot-version=v4.1 MDASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLHRAQSEGPFPLTGQYSPRDFVLSIQRPRSIIILVKAGNPVDQTISALTEFMEPG DTIIDGGNEWYQNTERRIQEVGDKGILYLGMGVSGGEEGARHGPSLMPGGSLEAYNNIESVLKSVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQ LISEAYDVLKNVGGLSNGELAEIFGEWNRGELESFLIEITSDIFKVKDDLADGDLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE ERESAAEILEKAGLKEEMGSVKSEIDKKRLIDDVRQALYASKICSYAQGMNLLRSKSVEKGWDLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPSLASL VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAFHTEWTKLARKSNAGFGAFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41670			6-phosphogluconate dehydrogena...		Potri.001G095800 [exp]	0	1
AT5G66820			unknown protein		Potri.007G041300 [exp]	14.00	0.7334
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	16.70	0.6358
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	27.20	0.6922
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.010G248100 [exp]	29.58	0.6389
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.008G107100 [exp]	36.94	0.6883
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Potri.001G412800 [exp]	144.83	0.6105
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	156.45	0.6049
					Potri.007G062362 [exp]	164.46	0.6049

Compare expression of checked genes

Potri.001G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.