Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60500 798 / 0 DRP4C Dynamin related protein 4C (.1) AT1G60530 426 / 2e-145 DRP4A Dynamin related protein 4A (.1) AT3G60190 166 / 2e-43 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G14120 166 / 5e-43 DRP3B dynamin related protein (.1.2.3) AT1G14830 162 / 2e-42 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT4G33650 163 / 7e-42 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT5G42080 156 / 4e-40 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 153 / 5e-39 ADL1B DYNAMIN-like 1B (.1) AT2G44590 149 / 6e-38 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G53140 81 / 1e-15 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024600 [exp] 957 / 0 AT1G60500 835 / 0.0 Dynamin related protein 4C (.1) Potri.003G024200 [exp] 954 / 0 AT1G60500 830 / 0.0 Dynamin related protein 4C (.1) Potri.003G024900 [exp] 951 / 0 AT1G60500 827 / 0.0 Dynamin related protein 4C (.1) Potri.013G119900 [exp] 882 / 0 AT1G60500 751 / 0.0 Dynamin related protein 4C (.1) Potri.013G124600 [exp] 876 / 0 AT1G60500 775 / 0.0 Dynamin related protein 4C (.1) Potri.013G120000 [exp] 867 / 0 AT1G60500 748 / 0.0 Dynamin related protein 4C (.1) Potri.003G024800 [exp] 702 / 0 AT1G60500 607 / 0.0 Dynamin related protein 4C (.1) Potri.010G105900 [exp] 163 / 1e-42 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.001G147500 [exp] 157 / 1e-40 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024334 [exp] 834 / 0 AT1G60500 771 / 0.0 Dynamin related protein 4C (.1) Lus10025903 [exp] 508 / 9e-174 AT1G60500 466 / 1e-157 Dynamin related protein 4C (.1) Lus10019170 [exp] 161 / 7e-42 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 161 / 1e-41 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10003873 [exp] 152 / 6e-39 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10014041 [exp] 152 / 2e-38 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 150 / 1e-37 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 148 / 7e-37 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 147 / 2e-36 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10040117 [exp] 146 / 2e-36 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region CL0023 [poplar] [flax] PF02212 [poplar] [flax] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Potri.001G095900.1 pacid=42791668 polypeptide=Potri.001G095900.1.p locus=Potri.001G095900 ID=Potri.001G095900.1.v4.1 annot-version=v4.1 ATGAGTGGAGGTAAGCGTATTGGTAGACCTTCAAAAGGCAAAAATGGGTTCCATAGCTCATCCTATGAAGAGGATTCATTACCTTTGGACGTTCGTGTAG AAGAAAATTTACTTGCAATAGTCGGTGGAGATGAAAATCAGCCTACGCCAATCCATAGCGTGCCAATTATGTCATCTTTCAACGATCGTATTCGTCCTAT ACTTGATGCAGTTGATCAGTTGAGGCACCTCATGGTGATGAAAGAAGGTATACAACTTCCCACCATTGTCGTTGTCGGTGATCAGTCTTCGGGGAAATCT AGTGTTCTTGAATCACTTGCTGGTATTAGTCTTCCTCGTGGTCAAGGAATATGCACTAGGGTACCCCTCATAATGAGGCTGCAGCATCATACGTCTCTCA TACCAGAGATGTTCTTGGAGTTTAATGGCAAAACAACCCAGACAGATGAAGCCAATGTTGCAGATGACATAAATATTGCCACCGAGGAGATTGCAGGCAG TGGTAAGGGCATATCTGATGCTCCATTAACTCTGGTGATAAAGAAGAATGGTGTTCCTGACCTAACAATGGTTGATCTTCCTGGAATCACTCGAGTTCCT GTTCATGGACAGCCTGACAATATCTATGAGCAGATTGCTGGAATTGTCATGCAGTACATACAACCTGAAGAGAGTATCATACTCAATGTTTTGCCTGCTA GTGTTGATTTCACCACATGTGAATCGATTAGGATGTCACGTCAAGTAGATAAGACTGGGGAGAGGACTCTAGCTGTGGTTACAAAGGCCGATAAAGCACC TGAGGGGCTGCTCGAGAAAGTTACCGCTGATGATGTGAACATAGGACTTGGTTATGTCTGTGTGAGAAATCGTATTGGAGATGAATCTTATGATAATGCG CGGATGGAAGAAGCGAACTTGTTTGCAACTCATCCTCTTCTTTCGAGGATTGATAAGTCAATTGTTGGTATTCCTGTTTTGGCTAAAAAACTGATGCAGG TTCAAGCCACTATAATGGCTAAATGCTGGCCAGAGATTGTTCGAAAGATTAATGAGAAGTTGAATGGCAATGTAACAGAGCTAAACAGGATGCCTAAGGC TATGTCGTCAGTTGCTGAGTTTCTGACTGCTTTCATGGAATTTATTGGATCTGTTAAAGAGTCTCTGACGAAAATCCTTGTTAGAGGTGAATATGATGAA TATCCAGATGATCCTAACATGCATGGTGTTGCTAGAGTGGTTGAAATGTTCAACCAATACTCTGATGAACTCTTGAATTGCCCAGAAAGTGAGCATACTA GAAACTTTCTGATGGATGAGATTCGTGTTTTGGACGATTCGAAAGCGATTGCACTTCCCAATTTCCTTCCCCGTCATGCCTTCCTCTCTTTACTGCAACG AAAAGTTGAAAGGGTTTCTCATATACCATTTGGCTTTGTTGAGAAAGCATGGGCTTACTTTGAAAATGTGGTTTGGTCTGTTTCGAGACACCACACTGAA AACTATCCTCAAGTTTTGTTAACCACTAAAAGGGCATGTCAGAATCTTATGGTGAAAATGAGAGAGCAGTCCACTGATTGGGTTTCTGAGCTTGTTCAAA TGGAGAAGCTGACAGATTACACCTGTAATCCTGAATACTTGAATGAGTGGAACATGCTTATGTCCCATCGTCAGACATTCATTGATGAAGTTCAGAAAAA TGAATCTTCAAAAATGAAGATTGAAGTTTTTGGAGAGGTAGAGATCGTTAATCTTAGAGGGTATCAGCCTCTTCTCTCTCAAGCATTTGACCTGAAAATG AGAATGACGGCCTACTGGAAGATTGTTTCTAGGAGGTTGGTTGATTGCATGGCACTTCATTTGCAACTCTGTGTTCGAAATCTAGTGAGCAAGGAGTTGG AGAAGGAGATTGCTACTGAATTGATGGCTACTAATGGTGGAAAGTTAGAGATGATGTTAGAGGAGGCTCCTTCTGTTGCAGCCAAACGTAAGAGGCTTAA CACCAGCATTGAGTTGCTGAGGGAAGCCAAGGATGTACTGTCCAATATCATGGGCAACGTTTCTGCCTAG
AA sequence Show only first row Show all	>Potri.001G095900.1 pacid=42791668 polypeptide=Potri.001G095900.1.p locus=Potri.001G095900 ID=Potri.001G095900.1.v4.1 annot-version=v4.1 MSGGKRIGRPSKGKNGFHSSSYEEDSLPLDVRVEENLLAIVGGDENQPTPIHSVPIMSSFNDRIRPILDAVDQLRHLMVMKEGIQLPTIVVVGDQSSGKS SVLESLAGISLPRGQGICTRVPLIMRLQHHTSLIPEMFLEFNGKTTQTDEANVADDINIATEEIAGSGKGISDAPLTLVIKKNGVPDLTMVDLPGITRVP VHGQPDNIYEQIAGIVMQYIQPEESIILNVLPASVDFTTCESIRMSRQVDKTGERTLAVVTKADKAPEGLLEKVTADDVNIGLGYVCVRNRIGDESYDNA RMEEANLFATHPLLSRIDKSIVGIPVLAKKLMQVQATIMAKCWPEIVRKINEKLNGNVTELNRMPKAMSSVAEFLTAFMEFIGSVKESLTKILVRGEYDE YPDDPNMHGVARVVEMFNQYSDELLNCPESEHTRNFLMDEIRVLDDSKAIALPNFLPRHAFLSLLQRKVERVSHIPFGFVEKAWAYFENVVWSVSRHHTE NYPQVLLTTKRACQNLMVKMREQSTDWVSELVQMEKLTDYTCNPEYLNEWNMLMSHRQTFIDEVQKNESSKMKIEVFGEVEIVNLRGYQPLLSQAFDLKM RMTAYWKIVSRRLVDCMALHLQLCVRNLVSKELEKEIATELMATNGGKLEMMLEEAPSVAAKRKRLNTSIELLREAKDVLSNIMGNVSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.001G095900 [exp]	0	1
					Potri.015G021450 [exp]	3.74	0.6954
AT4G31320			SAUR-like auxin-responsive pro...		Potri.013G054600 [exp]	12.40	0.6557	SAUR9
					Potri.015G014150 [exp]	14.96	0.6486
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011100 [exp]	15.42	0.6425
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.009G123600 [exp]	50.91	0.6623	/F5H2,Pt-IFS1.57
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	120.72	0.6147

Compare expression of checked genes

Potri.001G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.