Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) AT4G01140 133 / 8e-37 Protein of unknown function (DUF1191) (.1) AT3G08600 127 / 3e-34 Protein of unknown function (DUF1191) (.1) AT4G11950 92 / 3e-21 Protein of unknown function (DUF1191) (.1) AT4G22900 90 / 2e-20 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135400 [exp] 513 / 0 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 214 / 2e-68 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 213 / 4e-68 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 158 / 2e-46 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 134 / 4e-37 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.003G119400 [exp] 125 / 7e-34 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.001G112800 [exp] 119 / 1e-31 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028743 [exp] 333 / 6e-115 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 328 / 6e-113 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10007859 [exp] 104 / 5e-26 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 93 / 1e-21 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 91 / 9e-21 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 88 / 4e-20 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 81 / 3e-17 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10024479 [exp] 80 / 7e-17 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 76 / 4e-16 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10003033 [exp] 69 / 6e-13 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [poplar] [flax] Gain PF06697 [poplar] [flax] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Potri.001G096000.1 pacid=42790267 polypeptide=Potri.001G096000.1.p locus=Potri.001G096000 ID=Potri.001G096000.1.v4.1 annot-version=v4.1 ATGAGCTTGAATATCATCTGGTTACTTCTCAGCTTATATTTTTCGCCATCTGTGCACAGCTCAGACAACTATAATACTGATACTCTGGATGCATTTCTTC AGGATTCTGCTTTTAAGTCCTTGGTTCGACACCGGCCTCACACTGGTGCTTTATACAAGGCTTTGCTTCCTGCCAATCTATCAGGTGTGCAGGTCTCTAT AGTAAGAATCAGAAGCCGGACATTGTGGAACATTGGTGCTAATTTCAGCAACTTTCAGATTCCATCAAGAACCATGACATTGCCACATGTGAGGAGGCTG GCTATAGTTTATCAAGACCTGGGCAACTGGTCTTCTTACTACTACAGTGTTCCAGGTTACTCAATGATCACTCCTGTTGTTGGTTTTATGGTTTTCAACG CATCAAATGCAAGAGCCAAACGTATCGGGAAGGTTAGCCTGAATACAAGTGGAAAGGCAATAGTGATTCGTTTCGCCAATTCAACTATTACTGAGAGTAT GATATCCTCAGGAGCAAAATGTGTAACATTTAGTGCTAGCGGGACATTTCACCTTGGTGAAATCAACCTGCTTAATGAATGTCATTCTCAGGATCATGGC CACTTCTCCATTGTGGTTCCGCAAGAAGAGAGGAGTGGAAGAGATAGAAGGAAGCAGAGTCTCTGGTATTTGTGGGTTATAGGTTTCGCGCTTGGATTCA GTGTAGTTGCTTTTTTAGGATACTTTGGGATGGTGTCTCTGAAACTCTTGAAAACAAAGAAGATTCAAGTAATGGAAAGACAAGCTGATGAAGATTTGGT TCTTGAGACTATTTGGGTTGGCACTAGTAAAATGCCTTCTGCAACAGTAACAAGAACTCAACCAAACCTTGAGAATGGAGGTTTCTAA
AA sequence Show only first row Show all	>Potri.001G096000.1 pacid=42790267 polypeptide=Potri.001G096000.1.p locus=Potri.001G096000 ID=Potri.001G096000.1.v4.1 annot-version=v4.1 MSLNIIWLLLSLYFSPSVHSSDNYNTDTLDAFLQDSAFKSLVRHRPHTGALYKALLPANLSGVQVSIVRIRSRTLWNIGANFSNFQIPSRTMTLPHVRRL AIVYQDLGNWSSYYYSVPGYSMITPVVGFMVFNASNARAKRIGKVSLNTSGKAIVIRFANSTITESMISSGAKCVTFSASGTFHLGEINLLNECHSQDHG HFSIVVPQEERSGRDRRKQSLWYLWVIGFALGFSVVAFLGYFGMVSLKLLKTKKIQVMERQADEDLVLETIWVGTSKMPSATVTRTQPNLENGGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23720			Protein of unknown function (D...		Potri.001G096000 [exp]	0	1
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	1.41	0.8817
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	2.44	0.8511
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	3.74	0.8659
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	6.63	0.7929
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	7.07	0.8332
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.002G129600 [exp]	9.53	0.8310
					Potri.016G052400 [exp]	9.79	0.8315
AT4G23720			Protein of unknown function (D...		Potri.003G135400 [exp]	10.77	0.7388
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.010G081500 [exp]	10.81	0.7664	Pt-DMC1.2
AT4G21450			PapD-like superfamily protein ...		Potri.019G116400 [exp]	10.95	0.8159

Compare expression of checked genes

Potri.001G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.