Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 654 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 651 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 456 / 7e-156 BTB/POZ/Kelch-associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135300 [exp] 899 / 0 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.002G166700 [exp] 699 / 0 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.014G093700 [exp] 697 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017545 [exp] 701 / 0 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10032340 [exp] 684 / 0 AT3G61600 827 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10024723 [exp] 681 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10028744 [exp] 633 / 0 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] POZ PF07707 [poplar] [flax] BACK BTB And C-terminal Kelch
Representative CDS sequence Show only first row Show all	>Potri.001G096100.1 pacid=42789871 polypeptide=Potri.001G096100.1.p locus=Potri.001G096100 ID=Potri.001G096100.1.v4.1 annot-version=v4.1 ATGATATTACCGGGGGCAGACCTCTTTGATCCTCGAAGTGACATGGACTCGTACGTCTCTCCCGTCGAGTCCCGGTTGGACTATGATTTCAGTTTCGCTT TCAATGACAGTAATTTCTCTGATAGGGTGTTAAAGATCGAGATCGTCGCTGGTTTGCCTGATGTAAAATCAGCCGGTGATGGCTGCTCTGGCATCACTGA GTGGGCCCGTAACAGAAAGAGAAGAAGAGAGGATGTTAAGAAAGATAAAGCTGTGGAAATCGTGGGGCAAAGTGAGGATGAGCAGGCACTGACTTGTAAC ATTCCCGACACAGAGGATACTGTGGCTTATGAAAATCAAGATGTAGAAGCTGTAGCCATGGTTGAGGGGTCTCCTACAGATGCTCAATTGGATTTTCATC AACGTGGTGATGCTGCTGGTCCAAGCAGTGACTCATCCTGGAGCATGGATTGTTCAACAGTTCTAAGAGTTAAGAGTGTACATATTAGCTCTGCAATATT GGCAGCCAAGAGTCTATTTTTTCACGAGTTATTTTTAAATGGGATAAAAGATTCAGCGCAGCGAGACGTTACTATACAGATACATGCCTCTGAAGAAGAG GCCTTAATGGACCTCCTCAATTTTATGTATAGTAACAACTTATCAGCGAGCCGAGCAACTGCTTTGCTGGATGTGCTCTTGGCTGCTGACAAATTCAAGG TTGCATCATGCATGAGATATTGCAGCAAGTTATTGCGCAACATCCCAATGACCTGTGAATCTGCTTTGCTCTACTTGGACCTTCCTTCGAGTATTTTAAT GGCCGAAGCAGCTCAGCCCCTGACGGACGCAGCGAAGAAGTTTCTATCTGTGAGATACAAAGATATATATAAGTTTCAGGAAGAGGTGCTTGGATTGCCT TTGGCTGGTATTGAGGCTGTGCTATCCAGTGATTATCTCCAGGCAGCTTCAGAGGATACTATATATGACTTAGTGCTCAAGTGGGCTCATACTCATTATC CCAAATTGGAGGAGCGGAAAGAAGTTCTTGCCAAACAACTTGTTCAACTAATCCGTTTCCCATACATGACTTGTCGAAAATTGAAGAAGGTTTTAAATTG CAATGACTTACACCCTGAATTTGCATCCAAGGTTGTGCTTGAGGCCTTGTTTTTCAAGGCTGAGACACCACATAGGCAGCATGCTCTTGCAGTAGATGTA CCCAATGCTGTCAATCGTCGCTTTGTGGAGCGGGCATATAAGTACCGACCTGTCAAGGTGGTTGATTTTGAACTTCCTTATCAGCAGTGTGTGGTGTACC TGGACTTGAAGCGGGAGGAGTGTGCGCAACTCTTTCCCACTGGTCGGGTGTATTCGCAAGCATTTCACCTTGGTGGACAGGGGTTTTTCTTGTCTGCCCA CTGCAACATGGACCAACAGGGCACGTATCACTGTTTTGGACTTTTTCTGGGAATGCAAGAAAAGGGATCAGCGAGCTTTGCTGTTGACTATGAGTTTGCA GCCAGGTCAAAGCCAACTGAGGGGTATGTCAACAAGTACAAAGGGAACTACACTTTCACAGGTGGGAAGGCTGTTGGGTATCGGAACCTGTTCAGTGTAC ACTGGGAAGCATTCATGGAAGATGACAGCAATTATTTTATTAATGGCATCCTCCATCTCAGGGCTGAGCTTACCATAAGGCAATGA
AA sequence Show only first row Show all	>Potri.001G096100.1 pacid=42789871 polypeptide=Potri.001G096100.1.p locus=Potri.001G096100 ID=Potri.001G096100.1.v4.1 annot-version=v4.1 MILPGADLFDPRSDMDSYVSPVESRLDYDFSFAFNDSNFSDRVLKIEIVAGLPDVKSAGDGCSGITEWARNRKRRREDVKKDKAVEIVGQSEDEQALTCN IPDTEDTVAYENQDVEAVAMVEGSPTDAQLDFHQRGDAAGPSSDSSWSMDCSTVLRVKSVHISSAILAAKSLFFHELFLNGIKDSAQRDVTIQIHASEEE ALMDLLNFMYSNNLSASRATALLDVLLAADKFKVASCMRYCSKLLRNIPMTCESALLYLDLPSSILMAEAAQPLTDAAKKFLSVRYKDIYKFQEEVLGLP LAGIEAVLSSDYLQAASEDTIYDLVLKWAHTHYPKLEERKEVLAKQLVQLIRFPYMTCRKLKKVLNCNDLHPEFASKVVLEALFFKAETPHRQHALAVDV PNAVNRRFVERAYKYRPVKVVDFELPYQQCVVYLDLKREECAQLFPTGRVYSQAFHLGGQGFFLSAHCNMDQQGTYHCFGLFLGMQEKGSASFAVDYEFA ARSKPTEGYVNKYKGNYTFTGGKAVGYRNLFSVHWEAFMEDDSNYFINGILHLRAELTIRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	2.44	0.7052
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	3.16	0.6661	HYP1.1
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	9.48	0.7100
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	11.66	0.6734
AT3G17900			unknown protein		Potri.010G033900 [exp]	14.89	0.6567
AT3G51050			FG-GAP repeat-containing prote...		Potri.005G118300 [exp]	27.71	0.6940
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	33.86	0.5792
AT2G30700			unknown protein		Potri.017G018000 [exp]	34.64	0.6303
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	35.00	0.5807
AT2G04340			unknown protein		Potri.001G241100 [exp]	36.20	0.5534

Compare expression of checked genes

Potri.001G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.