Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41620 522 / 7e-180 unknown protein AT1G64180 417 / 4e-139 intracellular protein transport protein USO1-related (.1) AT3G11590 181 / 2e-49 unknown protein AT2G46250 172 / 2e-47 myosin heavy chain-related (.1) AT1G50660 116 / 5e-27 unknown protein AT3G20350 112 / 1e-25 unknown protein AT5G22310 96 / 9e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135000 [exp] 996 / 0 AT5G41620 494 / 1e-167 unknown protein Potri.002G166600 [exp] 520 / 3e-178 AT5G41620 345 / 6e-110 unknown protein Potri.014G093400 [exp] 494 / 2e-168 AT5G41620 347 / 8e-111 unknown protein Potri.016G074300 [exp] 186 / 6e-51 AT3G11590 560 / 0.0 unknown protein Potri.004G199500 [exp] 182 / 2e-49 AT3G11590 399 / 6e-131 unknown protein Potri.006G207800 [exp] 171 / 2e-45 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 164 / 2e-43 AT3G11590 399 / 9e-132 unknown protein Potri.011G090100 [exp] 121 / 8e-29 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 104 / 2e-23 AT1G50660 390 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017543 [exp] 707 / 0 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 681 / 0 AT5G41620 497 / 4e-170 unknown protein Lus10003027 [exp] 231 / 2e-68 AT5G41620 203 / 5e-58 unknown protein Lus10007858 [exp] 183 / 2e-52 AT5G41620 156 / 1e-42 unknown protein Lus10021324 [exp] 169 / 3e-44 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 161 / 5e-42 AT3G11590 587 / 0.0 unknown protein Lus10013312 [exp] 157 / 2e-41 AT3G11590 285 / 1e-88 unknown protein Lus10013311 [exp] 159 / 3e-41 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 155 / 4e-40 AT3G11590 322 / 1e-101 unknown protein Lus10043111 [exp] 128 / 6e-31 AT1G50660 616 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G096200.1 pacid=42791610 polypeptide=Potri.001G096200.1.p locus=Potri.001G096200 ID=Potri.001G096200.1.v4.1 annot-version=v4.1 ATGCACAAGGGTGTGCATCTTACTAATGGTGGTGGTGGTGGTGGTGATTCTAGGTTGCGCCGCCACGAAAAGCGGCAACATTTTTTCAAGGAAAAGGGAC TTGACCTCTCTCATTTCTTGGCTGACCCTTCTCCTAGTTCTCCTGATCAGCCAGAAAGTGCAGGCAGTTTAAGGAGACATATTGCTGCATCTCTGATTCA GCATCATCGATCAATTGAAAGAAGTAACCATGCTCTACAACCTGTATCTCCAGCAAGTTATGGTAGTTCTATGGAGGTGGCACCTTATAACCCTGCAGTC ACTCCTTCCAGCTCGTTGGACTTCAAAGGAAGGATTGGTGAGTCACATTATAGTCTCAAAACATCCACAGAATTACTAAAAGTATTGAATCGAATATGGA GCCTTGAAGAACAGCATGTTTCTAATGTGTCATTGATAAAAGCATTGAAGATTGAGCTAGACCATGCCCGTATCAGGATTAAAGAACTACTTCGGTATCA GCAAGCAGACCGGCATGAGATAGATGATTTAATGAAGCAAATTGCTGAAGATAAACTAGTTCAGAAGAGTAAGGAGCAGGAACGTTTGCATGCTGCTATC CAGTCTCTCAGGGATGAGCTGGAAGATGAGAGGAAGTTAAGAAAACGATCAGAGAGCCTACACAGGAAATTAGCCCGGGAGCTTTCTGAAGTGAAATCCT CCTTTTCTAATGCTTTGAAAGAGATGGAAAGAGAGAGAAAATCTAGAAAGTTGTTGGAAGACCTTTGTGATGAGTTTGCCAAGGGAATAAAAGACTACGA ACAGGAAGTGCATACCCTGAATAAAAAATCTGACAGGGATTGGGTTCGAAGGGCTGATGGTGATCGTTTGATTCTCCACATATCTGAATCATGGCTTGAT GAGCGGATGCAGATGAGGCTAGAAGAAGCACAGCATGGTTTTTCTGAAAACAACTCAATAGTGGACAAATTGGGTTTCGAAATAGAGACATTCCTTAAAA CTAAACGAATGGGTAATTCTAAGAGTAGCAATAACGTATTGCCAAGAGAACGGCGGAATTCAATGGAATCTGTCCCTCTGAATGAGACTGTAAGTGCTCC ACAAGATGTGGGTGATGAACAGGATTCAACGGGCAGTGATTCACACTGTTTTAAGCATAACAGACCAGGCAATGATGACTTTCACTTACATGGAGATGAA GCTGTTGCTGGTCATACTGATGAAATGGAAAAATCCACCCGAACAAAGAAAAAGCTTGCATCTCGTGAAAGGTCCAGGTGCCAAAATCCATCCAACTTGC AAGTTAAATTCGAAGAACACAAGGCTCAGGCTATGCCATGTAATGGAAATAAGAAATCCGAGGTGATGGAACTGGAAGGGGTAAAAACAGGTGAAGGAAA CCCTACTGAAGTGAGCATTTCTCGGAGGTCTGAAAACTGTGATGCCACTGAAGGTGGCAGTCTTGAAAGAAAGAGCAAAGTTGATGAAATTCATGGGTCA AACTCGAATTATGTGATTGATAACTTGATAAGAAGTCATATCTCATCATCAGAAGCAGTTAATCTGCACCTTGAGAACGATGCCGGTGAGGCTTCTTGCA GTTACCCACCAAGGAGGTATGCTAGTCCGGTTCGACAGTGGATGTCAAAACTTACTTCCCCAGATCTTGACATTTCTGAGTCTTCTACAAAACCGCCTCC AAACCTGAAGGAAAATACTTTGAAAGCGAAGCTTCTTGAAGCGCGGTCAAAGGGGCCACGCTCTCGTCTAAGAATCTTCAAAGGTTCTTCATAG
AA sequence Show only first row Show all	>Potri.001G096200.1 pacid=42791610 polypeptide=Potri.001G096200.1.p locus=Potri.001G096200 ID=Potri.001G096200.1.v4.1 annot-version=v4.1 MHKGVHLTNGGGGGGDSRLRRHEKRQHFFKEKGLDLSHFLADPSPSSPDQPESAGSLRRHIAASLIQHHRSIERSNHALQPVSPASYGSSMEVAPYNPAV TPSSSLDFKGRIGESHYSLKTSTELLKVLNRIWSLEEQHVSNVSLIKALKIELDHARIRIKELLRYQQADRHEIDDLMKQIAEDKLVQKSKEQERLHAAI QSLRDELEDERKLRKRSESLHRKLARELSEVKSSFSNALKEMERERKSRKLLEDLCDEFAKGIKDYEQEVHTLNKKSDRDWVRRADGDRLILHISESWLD ERMQMRLEEAQHGFSENNSIVDKLGFEIETFLKTKRMGNSKSSNNVLPRERRNSMESVPLNETVSAPQDVGDEQDSTGSDSHCFKHNRPGNDDFHLHGDE AVAGHTDEMEKSTRTKKKLASRERSRCQNPSNLQVKFEEHKAQAMPCNGNKKSEVMELEGVKTGEGNPTEVSISRRSENCDATEGGSLERKSKVDEIHGS NSNYVIDNLIRSHISSSEAVNLHLENDAGEASCSYPPRRYASPVRQWMSKLTSPDLDISESSTKPPPNLKENTLKAKLLEARSKGPRSRLRIFKGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41620			unknown protein		Potri.001G096200 [exp]	0	1
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.017G130200 [exp]	2.00	0.7893
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	3.87	0.7846
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	7.34	0.7894	AGO913
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	9.48	0.7679
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	12.44	0.8068
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	14.07	0.7567	PtrAUX1,AUX1.2
AT5G45540			Protein of unknown function (D...		Potri.015G116201 [exp]	14.56	0.7961
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.013G041400 [exp]	23.74	0.7212
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	32.24	0.7477
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	34.59	0.7782

Compare expression of checked genes

Potri.001G096200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.