Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 1068 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 932 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 897 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G64170 799 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 714 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G13620 667 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 399 / 3e-126 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 359 / 1e-111 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 327 / 1e-99 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 296 / 4e-88 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142301 [exp] 1528 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 1079 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 949 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 946 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 705 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 681 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 449 / 2e-145 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 446 / 4e-144 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.019G123700 [exp] 397 / 7e-126 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 1008 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 1001 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017541 [exp] 799 / 0 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10035312 [exp] 685 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 683 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 624 / 0 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10028748 [exp] 552 / 0 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10024717 [exp] 474 / 1e-159 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10040881 [exp] 424 / 8e-136 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 410 / 2e-130 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.001G096320.1 pacid=42788442 polypeptide=Potri.001G096320.1.p locus=Potri.001G096320 ID=Potri.001G096320.1.v4.1 annot-version=v4.1 ATGGTTTCGTCAAATGCTACATCAGGATATGCATGTCCATCTATAAAGCCAACATCAAATGGGGTATTTCAGGGTGATAATCCTCTTGATTTTGCACTCC CTTTAGCCATTTTGCAGATATGCTTGGTGGTTGTGGTAACAAGGGGTCTTGCTTTTCTGTTACGACCATTGAGACAGCCAAGGGTGATTGCAGAGATTAT TGGAGGAATTTTACTTGGGCCATCTGCTTTGGGTCGAAGCAAGGGATATTTGCAGGCTGTATTCCCAACCAGGAGTCTGACGGTGTTAGATACCCTTGCA AACATTGGCCTCATTTTCTTTTTGTTTCTTGCTGGACTAGAGTTAGATCCCAAATCTCTTGGTCGAACTGGAAAAAAGGCACTAGCAATTGCCATGGCAG GAATTAGCCTCCCTTTTGCAATGGGAATTGGCACATCATTTATTCTCCGGTTAACCATATCTAAAGATGTTAACAGCACTGCATTTCTTGTTTTCATGGG GGTGGCACTTTCTATAACTGCCTTCCCTGTCTTGGCACGAATTCTAGCTGAGCTGAAGCTCTTAACAACTGATATTGGCAGAATGGCCATGTCAGCTGCA GCAGTAAATGATGTGGCCGCATGGATTCTTCTTGCTCTTGCCATTTCTCTGTCTGGATCTAATACTTCTCCCATTATTTCATTTTGGGTTTTCTTGTCTG GGTGTATTTTTGTCATTTGTTCAATTCTAATTGTGCCCCCAATCTTCAAATGGATGACTAAGTGGTGCCAAGAAGGTGAGCCAGTTGAAGAGATGTATGT ATGTGCTACATTAGCTGCTGTTCTGGCTGCTGGGTTTGTAACTGATGCTATTGGAATTCATGCTATGTTTGGTGCTTTTGTTATTGGAATCCTGGTGCCA AAGGAAGGTCCATTTGCAGGTGCTCTTGTAGAAAAAGTTGAAGATATTGTTTCTGGACTCTTCCTTCCATTGTACTTTGTCTCAAGTGGACTAAAGACCA ATGTAGCGACAATTCAAGGGTCCCAATCTTGGGGCCTACTGGTTTTGGTTATTTTCACAGCATGTTTTGGGAAGATTGTTGGCACTTTTGTGGTGTCCAT TTTATGCAAAGTGCCTCTCCGTGAGTCTCTTGCCATGGCATTCCTAATGAACACCAAAGGCTTGGTGGAACTCATTGTTCTCAATATTGGTAAAGATAGA AAGGTTTTGAATGATGAGACATTTTCCATTATGGTTTTAATGGCTCTGTTTACAACCTTCATCACTACACCTCTTGTTACAGCTGTTTACAAGCCAGCAC GAAGAGTAAAGATGGCTGACTACAAGTATAGGACAGTTGAAAGGAGAAGTTCAAATACTGAACTTAGGATTTTGGCCTGTTTCCATGGCTCGAGAAATAT TTCATCGATAATAAATCTTCTTGAAGTGTCACGAGGGGTTGAGAAGGCTGAAGGGCTTTGTGTATATGCAATGCACCTCATGGAGCTTTCTGAGAGGACA TCAGCCATATTAATGGTCCACAAGGCAAGGAAAAATGGGTTGCCCTTTTGGAACCGGGGCCAGCGGTCTGGTTCTAACCTTGTTGTCGTGGCATTTGATG CTTTCCAGCAATTGAGCCGTGTTTCTGTCCGGCCGATGACTGCAATCTCTTCAATGGCTGACATGCATGAGGACATTTGCACCACTGCTGAGAGGAAGAG AGCTGCAATGATCATTCTTCCATTCCATAAACTCCAGAGGTTGGATGGCTCACTTGAGACAACTCGAACTGACTTCCAACTGGTTAACAGGAGAGTTCTT GGGGATGCACCTTGCTCAGTTGGAATTCTAGTTGACCGCGGGTTTGGTGGAACCACTCAGGTATCTGCAAGTAACGTTTCTTATGTTATCACAGTCCTTT TCTTTGGAGGCCGTGATGATCGTGAAGCCCTTGCTTATGGAGCTCGAATGGCTGAACACCCTGGTGTCAGTTTAAAGGTTTTTCGCTTCTTAGTGAAACC CGAAGCTGGAGGAGAGATATCCAGAGTGAAACCTGAAGCTGGAGGAGAGATATCCAGAGTTGATATGGATGGTAGTTCTAGCACCAGATTGGGATCATTG GATGAAGATTTCATCTCAGAGTTGAAGCAGAAAATGTCCAAGGATGACTCTGTGAAACTTGAAGAGAAATTTGTTGGAAATGCTGCAGAAACTATCGATG CAATCCATGAGGCACGCCACAGCAATCTTTTCCTGGTGGGCCGATTGCCTGATGGTGAAATAGCCTTAGATTTAAGGAGTAGCAGTGACAGTCCAGAACT GGGGCCTGTAGGGGGGCTGTTGGCCTCTTCTGATATCTCAACAACAGCGTCAGTTTTGGTGGTTAAACAGTACAGCAGCCGAGTGTCTTTGGATTTAGCT TTGCAGATTGGGTAA
AA sequence Show only first row Show all	>Potri.001G096320.1 pacid=42788442 polypeptide=Potri.001G096320.1.p locus=Potri.001G096320 ID=Potri.001G096320.1.v4.1 annot-version=v4.1 MVSSNATSGYACPSIKPTSNGVFQGDNPLDFALPLAILQICLVVVVTRGLAFLLRPLRQPRVIAEIIGGILLGPSALGRSKGYLQAVFPTRSLTVLDTLA NIGLIFFLFLAGLELDPKSLGRTGKKALAIAMAGISLPFAMGIGTSFILRLTISKDVNSTAFLVFMGVALSITAFPVLARILAELKLLTTDIGRMAMSAA AVNDVAAWILLALAISLSGSNTSPIISFWVFLSGCIFVICSILIVPPIFKWMTKWCQEGEPVEEMYVCATLAAVLAAGFVTDAIGIHAMFGAFVIGILVP KEGPFAGALVEKVEDIVSGLFLPLYFVSSGLKTNVATIQGSQSWGLLVLVIFTACFGKIVGTFVVSILCKVPLRESLAMAFLMNTKGLVELIVLNIGKDR KVLNDETFSIMVLMALFTTFITTPLVTAVYKPARRVKMADYKYRTVERRSSNTELRILACFHGSRNISSIINLLEVSRGVEKAEGLCVYAMHLMELSERT SAILMVHKARKNGLPFWNRGQRSGSNLVVVAFDAFQQLSRVSVRPMTAISSMADMHEDICTTAERKRAAMIILPFHKLQRLDGSLETTRTDFQLVNRRVL GDAPCSVGILVDRGFGGTTQVSASNVSYVITVLFFGGRDDREALAYGARMAEHPGVSLKVFRFLVKPEAGGEISRVKPEAGGEISRVDMDGSSSTRLGSL DEDFISELKQKMSKDDSVKLEEKFVGNAAETIDAIHEARHSNLFLVGRLPDGEIALDLRSSSDSPELGPVGGLLASSDISTTASVLVVKQYSSRVSLDLA LQIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.001G096320 [exp]	0	1
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.013G142301 [exp]	2.00	0.9895
AT1G76520			Auxin efflux carrier family pr...		Potri.003G108100 [exp]	6.00	0.7047
AT1G54920			unknown protein		Potri.005G034100 [exp]	6.32	0.6971
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	16.79	0.7233
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	19.74	0.6783
AT1G67360			Rubber elongation factor prote...		Potri.003G173100 [exp]	21.21	0.6907
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.012G132400 [exp]	21.21	0.7056	Pt-GA20.1,GA20ox6
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	28.98	0.6154
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	35.09	0.6828
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	35.24	0.6689

Compare expression of checked genes

Potri.001G096320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.