Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64140 720 / 0 unknown protein AT5G64550 442 / 4e-147 loricrin-related (.1) AT5G09670 438 / 1e-146 loricrin-related (.1.2) AT4G12020 231 / 6e-64 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134200 [exp] 1085 / 0 AT1G64140 690 / 0.0 unknown protein Potri.003G023300 [exp] 459 / 2e-153 AT5G64550 716 / 0.0 loricrin-related (.1) Potri.001G206600 [exp] 451 / 2e-150 AT5G64550 675 / 0.0 loricrin-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032329 [exp] 839 / 0 AT1G64140 690 / 0.0 unknown protein Lus10019307 [exp] 449 / 5e-150 AT5G64550 639 / 0.0 loricrin-related (.1) Lus10011515 [exp] 445 / 1e-148 AT5G64550 652 / 0.0 loricrin-related (.1) Lus10024712 [exp] 367 / 5e-123 AT1G64140 298 / 2e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G097200.4 pacid=42789830 polypeptide=Potri.001G097200.4.p locus=Potri.001G097200 ID=Potri.001G097200.4.v4.1 annot-version=v4.1 ATGTTTAGCCATTGCTTCATGGACAACAGACTCCGGAACCTTGGTTTTGCTGCTGATTGCCCTTCAAATGCATCCAAGAATTTGGGCAGTTCAATGCCCG TTGGAGTTGGAGTAGCTGGCACCAAATTCAGTGCAGATACTGTCTTGCGCCTTGATTCCCTAGGATCTTCGGTTCCCTATGGGTCTCCCTCTAAGGGTAT TAAGCGGAAGCGGAATTTGATTGATGGATCCATGGGCCTAAATGTTGGTTCTTCACTATCCCTTGGGCTTCGCCGCTCTTCAAGTTCTTCAGACAGTAAG GGGAGTTCAGCAACTGCTTGCACAGCAATGTCTTCTGCCAAAGAAACTGATGAAGAGTCCTCAATGGATCTTGAATTGGACTTCTCTCTCCATCTTGGCA ACGAGAAGATGTCGAGCCCGAAGAAGCCTGCTGGTTCAAATCTCAAAGGAATGGAATTGCAGCCCAGGGTTGACTTGGAGCTGAGTCTCTCCACTGGTCC TTCTGAATCCGATATTACTAGCATCCATCCACACTCTAGTTCACTTGAATTTGGCATGGATATGCCGCTGGCAATGGGTGGAGCATCAAATGTGGATGAA CGATTGACATCAGATAGTTGGAAATCAGGGATTGCATTGCTTCCATTGCAGATTTCCCAGAACAAAGAGGCTAGCTTCTTCAACCAGATTCCAAGAACTA GGGATCCTACTTCCAGTTTTCCAGACCACTCATCTAGTGTGATAACACCAAAGAGTTCAGTCACCTGCACTTCTGGGATAACACAGCAGCAACAGCCATA TCAACGCAGCGCTAGCTCAAAGTTATGTCAGGTTGAAGGATGTGGAAAGGGTGCCAGAGGCGCTTCCGGCCGTTGTATTTCACATGGTGGAGGCCGAAGG TGTCAGAAAGCAGGCTGTCACAAGGGAGCTGAGGGCCGAACAGTGTACTGCAAGGCCCATGGGGGTGGACGCCGCTGTGAATTCCTTGGTTGCACAAAAA GTGCAGAAGGTCGCACAGATTTCTGTATTGCCCATGGTGGCGGGCGGAGATGCAGTCGTGAGGGTTGTGCTCGAGCTGCCAGAGGAAAATCTGGTTTGTG CATCCGACATGGTGGGGGTAAGAGATGCCAGAAAGAAAATTGCACAAAGAGTGCAGAAGGTCTATCTGGTCTCTGCATTTCTCATGGAGGTGGTCGGCGA TGCCAATTCTCAGGATGCACAAAAGGGGCACAAGGGAGCACCATGTTATGTAAGGCACATGGTGGGGGGAAACGCTGCACTGCTCCAGGATGCACCAAGG GTGCTGAAGGGAGCACTCCTTTTTGTAAAGGCCACGGAGGAGGAAAAAGGTGTGCCTTCCAACGTGGTGGGGTTTGTAGTAAGAGTGTACATGGAGGGAC CAACTTCTGCGTCGCACATGGGGGTGGAAAGAGGTGTGCTGTACCTGAGTGCACAAAGAGTGCAAGAGGACGTACAGATTTTTGTGTCCGTCATGGCGGT GGAAAAAGGTGCAAGGTTGAAGGATGTGGTAAAAGTGCTCAAGGCAGCACCGATTTCTGCAAGGCACATGGTGGAGGGAAGAGATGCTCTTGGGGTCATC CTGGGTCAGAATATGGTAACCTACCTTCTGGTCCTTGTACCTCATTTGCAAGGGGTAAGACAGGTCTCTGTGCACTTCACAGCGGTTTGGTGCAGGACAA GAGGGTTCATGGTGGTGTCACCTTGGGACCTATGGTCCAGGACCCTAAAATTAGTCAGTCTGAGAAGACGAAAGAAGTTGTCACTGTCGAGGACATGACT GTCGATATTGTGAAGATGGGTACTAGTGCCAGGGATTCATTGGGCAGAACTACTTCTGATTTGAAACATTTTGGAGTCTCAAATGCTCATCTCTCTGCCA GTGAAGCAGGTCTCTCATCAATGCCAGTTTTTGTATCAGAAGGCAGGGTGCATGGAGGCAGTTTGATGGCAATGCTTGCTGGTGGTTCTGGTGTTGGCTC ATGCAGCAACCAAATTGTAGCTGGAGATCCACCAGAGCCAAGAAAATCATATATTACAACTCAGAACTGGATGTAA
AA sequence Show only first row Show all	>Potri.001G097200.4 pacid=42789830 polypeptide=Potri.001G097200.4.p locus=Potri.001G097200 ID=Potri.001G097200.4.v4.1 annot-version=v4.1 MFSHCFMDNRLRNLGFAADCPSNASKNLGSSMPVGVGVAGTKFSADTVLRLDSLGSSVPYGSPSKGIKRKRNLIDGSMGLNVGSSLSLGLRRSSSSSDSK GSSATACTAMSSAKETDEESSMDLELDFSLHLGNEKMSSPKKPAGSNLKGMELQPRVDLELSLSTGPSESDITSIHPHSSSLEFGMDMPLAMGGASNVDE RLTSDSWKSGIALLPLQISQNKEASFFNQIPRTRDPTSSFPDHSSSVITPKSSVTCTSGITQQQQPYQRSASSKLCQVEGCGKGARGASGRCISHGGGRR CQKAGCHKGAEGRTVYCKAHGGGRRCEFLGCTKSAEGRTDFCIAHGGGRRCSREGCARAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGGRR CQFSGCTKGAQGSTMLCKAHGGGKRCTAPGCTKGAEGSTPFCKGHGGGKRCAFQRGGVCSKSVHGGTNFCVAHGGGKRCAVPECTKSARGRTDFCVRHGG GKRCKVEGCGKSAQGSTDFCKAHGGGKRCSWGHPGSEYGNLPSGPCTSFARGKTGLCALHSGLVQDKRVHGGVTLGPMVQDPKISQSEKTKEVVTVEDMT VDIVKMGTSARDSLGRTTSDLKHFGVSNAHLSASEAGLSSMPVFVSEGRVHGGSLMAMLAGGSGVGSCSNQIVAGDPPEPRKSYITTQNWM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64140			unknown protein		Potri.001G097200 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	2.00	0.8462
AT3G62010			unknown protein		Potri.002G184400 [exp]	3.31	0.8706
AT1G75400			RING/U-box superfamily protein...		Potri.002G031600 [exp]	7.87	0.7966
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	10.24	0.8433
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	11.61	0.8264
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	14.69	0.8254
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	15.00	0.8290
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.004G120500 [exp]	17.02	0.7978
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	18.00	0.8312
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	19.44	0.8083

Compare expression of checked genes

Potri.001G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.