Plant FIBer expression Database

Potri.001G097500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1)
AT1G14270 90 / 4e-20 CAAX amino terminal protease family protein (.1.2.3.4)
AT2G20725 74 / 1e-14 CAAX amino terminal protease family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G133800
[exp]
639 / 0 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1)
Potri.008G147600
[exp]
90 / 3e-20 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4)
Potri.019G101100
[exp]
66 / 8e-12 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017536
[exp]
509 / 0 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1)
Lus10028751
[exp]
507 / 0 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1)
Lus10024708
[exp]
504 / 4e-179 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1)
Lus10032326
[exp]
457 / 2e-161 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1)
Lus10036748
[exp]
86 / 1e-18 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4)
Lus10037179
[exp]
78 / 6e-16 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4)
Lus10018585
[exp]
61 / 3e-10 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1)
Lus10039818
[exp]
56 / 5e-09 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0472 Peptidase_U PF02517 CPBP CPBP intramembrane metalloprotease
Representative CDS sequence
>Potri.001G097500.2 pacid=42792580 polypeptide=Potri.001G097500.2.p locus=Potri.001G097500 ID=Potri.001G097500.2.v4.1 annot-version=v4.1
ATGTTGAGCTTATCTCAACGACCCATTTCTGCTCCTTCAATACCCAACCTTAGGGTTTTTAATCGACCTCGAAATCACTCTCTTTTTGCGAGGAATAATC
GGATCTTTGAATCCAATTCGAAGCTACCAAAGCTTAAATGGAGAATTTCGTTCTTTAGAAATGAGGAAATTTCTCAGGTAAATCCTGGGTCTGATAGTGT
TGAACGCTACGTGCCTGAGGAATTGGTGAAGCCTGAATTGGATAACTCTACGAATGTTAAAGGAGATTGGATATCGAGTCTTCGAGAGGCTGCTCATGTA
GTGTTGAGGGCATTTGGGAGCCGGTGGACTGTACCATGGACAGCAGAGACCATAGTTCAGGTGATGCTTCTCTGGGTTGTTTCATTCTGGTTCATAGGGT
CCTGGGTGATTCCTTTTGCAGCACACATTGCAGGTTTCAACAAGGAATCTCTAACATTTAGAGGTCAAGCTTTGTTCAGCCTTGTGACTGATGTGACTGA
AGGCCTTGCTGGAATTGCAATTCTTCATCGTTGTCTGTCTCGATTTCGTCCCCTTTCATCTGATTGGTTTAGGTTCAGGCTGAAAGGGAACTGGGTGTTT
GACGTTGCTCTTGGATGTCTCATGTTTCCACTAGTTAACCGGCTTTCACAGTTCAACCTTAGCCTATTGCCTATTCTGCCTTCAACACCTGTCACCCTCT
CAAGTGTTGAGCAGTCAATTGCAGCACGGGATCCAGTGGCGATGGCACTGTATGCAATAGTAGTTTCAGTGTGTGCTCCTGTATGGGAGGAAATAGTCTT
CCGGGGTTTCCTTCTCCCATCCTTGACCAGGTACATGCCAGTCTGGTGTGCAATATTGGTGAGTTCAGTTGCCTTTGCGCTGGCACATTTTAATGTACAG
AGAATGCTACCGCTTATTTTTCTTGGAGTGGTGATGGGTGTTATATTTACAAGGTCACGGAATTTATTGCCATCTATGCTTCTTCATAGCCTCTGGAATG
GTTTTGTATTCTTGGATTTAATGAAATAG
AA sequence
>Potri.001G097500.2 pacid=42792580 polypeptide=Potri.001G097500.2.p locus=Potri.001G097500 ID=Potri.001G097500.2.v4.1 annot-version=v4.1
MLSLSQRPISAPSIPNLRVFNRPRNHSLFARNNRIFESNSKLPKLKWRISFFRNEEISQVNPGSDSVERYVPEELVKPELDNSTNVKGDWISSLREAAHV
VLRAFGSRWTVPWTAETIVQVMLLWVVSFWFIGSWVIPFAAHIAGFNKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFRPLSSDWFRFRLKGNWVF
DVALGCLMFPLVNRLSQFNLSLLPILPSTPVTLSSVEQSIAARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTRYMPVWCAILVSSVAFALAHFNVQ
RMLPLIFLGVVMGVIFTRSRNLLPSMLLHSLWNGFVFLDLMK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60750 CAAX amino terminal protease f... Potri.001G097500
[exp]
0 1
AT3G10350 P-loop containing nucleoside t... Potri.008G037100
[exp]
8.30 0.8446
AT2G43630 unknown protein Potri.006G123800
[exp]
12.32 0.8369
AT2G27800 Tetratricopeptide repeat (TPR)... Potri.018G093700
[exp]
13.26 0.8015
AT1G76050 Pseudouridine synthase family ... Potri.002G016800
[exp]
15.09 0.8392
AT5G08290 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, m... Potri.007G072700
[exp]
16.30 0.7854
AT1G02020 nitroreductase family protein ... Potri.002G146100
[exp]
20.49 0.8032
AT1G50170 ATSIRB sirohydrochlorin ferrochelatas... Potri.001G178800
[exp]
28.77 0.8305
AT5G27280 Zim17-type zinc finger protein... Potri.002G015900
[exp]
34.89 0.8020
AT3G48070 RING/U-box superfamily protein... Potri.012G074500
[exp]
36.12 0.7910
AT4G29960 unknown protein Potri.018G143000
[exp]
39.82 0.7921

Potri.001G097500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.