Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64110 1160 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 1087 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 1063 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 489 / 2e-156 AAA-type ATPase family protein (.1.2) AT4G02480 466 / 2e-147 AAA-type ATPase family protein (.1) AT4G24860 400 / 5e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 379 / 5e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 372 / 1e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G62130 372 / 5e-114 AAA-type ATPase family protein (.1) AT4G27680 279 / 7e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133700 [exp] 1444 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 1141 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 1115 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G096300 [exp] 492 / 3e-157 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 487 / 7e-156 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 478 / 3e-152 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.002G205900 [exp] 474 / 8e-151 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.007G069800 [exp] 359 / 2e-109 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 354 / 1e-107 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024692 [exp] 1183 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 1154 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 1143 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 1071 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 1060 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 461 / 6e-146 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 459 / 7e-145 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 376 / 5e-116 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 365 / 2e-111 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 358 / 2e-108 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.001G097600.3 pacid=42792675 polypeptide=Potri.001G097600.3.p locus=Potri.001G097600 ID=Potri.001G097600.3.v4.1 annot-version=v4.1 ATGGAGCAGAAGCACATAGTGTTATCGGCGTTGAGTGTAGGAGTAGGGGTGGGGGTGGGAATAGGATTGGCGTCAGGAAAAACAGTGAGTAAATGGAGAG GAGACGCATCCGACGGTATAAATTCGGAGACGATGGAGCAAGAATTGCTTAGGCAAGTTATTGATGGAAGAGATAGCGGCGTCACCTTTGATCAATTCCC TTACTACCTCAGTGAGCAGACGCGGGTATTACTAACAAGCGCTGCCTATTTCCACTTGAAGCATGCTGAAGCTTCCAAGTATACGAGGAACCTATCACCA GCAAGTCGGGCCATTTTGCTTTCAGGACCTGCAGAGCCTTATCAACAAATGCTTGCCAAGGCTTTGGCACATTACTTTGAAGCCAAATTGCTGCTATTAG ATGCGACCGACTTTTCTCTTAAGATACAGAGCAAATACGGTGCAAACAAAGAATCTTTGTTCAAAAGATCCAATTCAGAGACAACACTAGAGCGATTGTC TGGTTTCCTTGGATCATTTTCGATTCTTCCACAAAAGGAGGAGCCCATGCGCTCACTGTATAGGCAATCTAGTGGCGTGGATATTCCATCAAGGGGGCTA GACAGTTCTTATAATCCTCGGAAGCTAAGAAGAAATTCCTCTGCTGCAGCTAATCTAAGCAATGAAATTACACAGAGTAGTCCTGCAAATACAGCTCCTT TGAAGCGTACAAGCAGTTGGTCTTTTGATGAGAAGCTTCTTATACAGTCTCTTTACAAGGTTCTGGTTCATGTGTCTAAAACTAGTCCCATTGTGTTGTA CCTGAGGGATGCAGAGAAGATCTTATTCAGATCAAAGAGGACGTACAATTTGTTTCAGAAGATGTTCAATAAACTGTCTGGATCGGTACTGATCCTTGGT TCACGAGTTTTAGATCTGAGTAATGACTCCAGAGAGGTCGATGAGGGGCTTACTGCTCTTTTCCCGTACAACATTGAAATCAAGCCTCCTGGAGACGAAA CTCATCTAGTCAGCTGGAAAAATAAGCTAGAGGAGGATATGAAGATGATCCAAGTTCGCGATAATAGAAATCACATCATGGAAGTACTCTCAGCGAATGA TCTGGATTGTGATGATCTGGATTCAGTCTGTGTGGCAGACACAATGGCTCTCAGTAATTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTACCATTTA ATGAACAAGTATCCTGAATACAGAAATGGAAAACTTGTTGTGTCATCCAAAAGTTTATCGCATGGATTGAGTATATTCCAGGAGAGCAAGTCCATGGGCA AAGATTCATTGAAAGTGGAAGCTCAGGCAGAAACATCCAAGGAAGCAGGAGGGAATGAGACTGTTGCTGTGAAACCAGAAACAAAAGCTGAAGGTGTAAA TCCAGAAAATAAAAGTGAAGTAGAGAAAAAGGCTTCAGGGGTTAAGGCAGTTGGTGAAAATTCCTTACCAGCATCAAAAGCTCCGGAAGTTCCTCCTGAC AATGAATTTGAAAAACGCATAAGGCCAGAGGTGATACCTCCGAATGAGATTAATGTAACTTTTTCCGACATTGGTGCCTTGGAAGAGACCAAAGAATCGC TTCAGGAACTAGTGATGCTTCCTCTTCGTAGACCAGACCTCTTTAAAGGAGGGCTGCTAAAGCCTTGCAGGGGAATTTTGCTGTTTGGCCCTCCTGGAAC TGGGAAGACAATGCTTGCAAAAGCTATTGCTAAAGAAGCTGGAGCCAGCTTCATCAATGTATCTATGTCAACCATTACTTCCAAATGGTTTGGTGAAGAT GAGAAGAATGTCCGAGCTTTGTTCACACTGGCAGCAAAGGTTTCCCCAACTATTATATTTGTAGATGAGGTGGATAGCATGCTTGGGCAGAGAAGTAGAG CTGGGGAGCATGAAGCGATGAGGAAGATAAAGAATGAGTTCATGACTCATTGGGATGGGCTTTTGACAAATCAGGGTGAGCGCATACTTGTGCTCGCTGC TACCAACCGGCCATTTGACCTTGATGAAGCAATTATTAGGCGTTTTGAGCGGAGAATTATGGTGGGGCTTCCTTCTGCGGAGCACAGGGAAAGGATTTTG AAAACTCTCTTGGGAAAAGAAAAGATGGAAGGACTAGATTTTAAGGAGCTTGCTACTATGACAGAAGGATATTCAGGAAGCGATCTTAAGAACTTGTGCA CTACAGCTGCCTATCGGCCTGTCAGGGAGTTGATACAACAAGAAAGATTAAAGGATTTGGTGAAAAAACAAAGAGCTGAAGCAGCACAAAAATTAGGAGA AGCTACTGATACAAAAGAAGTAAAAAAAGAGAGAGTCATCACCCTTAGACCACTAAATATGGAAGACTTTAAGCTTGCAAAGAATCAGGTTGCCGCTAGC TTTGCTGCAGAAGGAGCTTCAATGAACGAGTTGCAGCAGTGGAATGAATTGTACGGGGAAGGAGGTTCAAGGAAAAAACAGCAGTTGACCTACTTCTTAT GA
AA sequence Show only first row Show all	>Potri.001G097600.3 pacid=42792675 polypeptide=Potri.001G097600.3.p locus=Potri.001G097600 ID=Potri.001G097600.3.v4.1 annot-version=v4.1 MEQKHIVLSALSVGVGVGVGIGLASGKTVSKWRGDASDGINSETMEQELLRQVIDGRDSGVTFDQFPYYLSEQTRVLLTSAAYFHLKHAEASKYTRNLSP ASRAILLSGPAEPYQQMLAKALAHYFEAKLLLLDATDFSLKIQSKYGANKESLFKRSNSETTLERLSGFLGSFSILPQKEEPMRSLYRQSSGVDIPSRGL DSSYNPRKLRRNSSAAANLSNEITQSSPANTAPLKRTSSWSFDEKLLIQSLYKVLVHVSKTSPIVLYLRDAEKILFRSKRTYNLFQKMFNKLSGSVLILG SRVLDLSNDSREVDEGLTALFPYNIEIKPPGDETHLVSWKNKLEEDMKMIQVRDNRNHIMEVLSANDLDCDDLDSVCVADTMALSNYIEEIVVSAISYHL MNKYPEYRNGKLVVSSKSLSHGLSIFQESKSMGKDSLKVEAQAETSKEAGGNETVAVKPETKAEGVNPENKSEVEKKASGVKAVGENSLPASKAPEVPPD NEFEKRIRPEVIPPNEINVTFSDIGALEETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGED EKNVRALFTLAAKVSPTIIFVDEVDSMLGQRSRAGEHEAMRKIKNEFMTHWDGLLTNQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAEHRERIL KTLLGKEKMEGLDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIQQERLKDLVKKQRAEAAQKLGEATDTKEVKKERVITLRPLNMEDFKLAKNQVAAS FAAEGASMNELQQWNELYGEGGSRKKQQLTYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.001G097600 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.006G221400 [exp]	1.73	0.8046
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Potri.006G169800 [exp]	4.35	0.8265
					Potri.015G098950 [exp]	15.29	0.7004
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150500 [exp]	15.74	0.7436	CYP76.3
AT2G27285			Coiled-coil domain-containing ...		Potri.004G201300 [exp]	15.87	0.7225
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.003G169400 [exp]	24.24	0.8121
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	30.04	0.7517
AT1G58122		CPuORF45	conserved peptide upstream ope...		Potri.002G104450 [exp]	32.83	0.7136
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.012G079100 [exp]	36.05	0.7617
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.017G094100 [exp]	50.43	0.7229

Compare expression of checked genes

Potri.001G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.