Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23620 320 / 7e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) AT5G66860 154 / 7e-46 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135000 [exp] 155 / 4e-46 AT5G66860 320 / 5e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.007G039700 [exp] 149 / 8e-44 AT5G66860 315 / 4e-109 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011005 [exp] 310 / 4e-107 AT4G23620 328 / 4e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10000590 [exp] 307 / 8e-106 AT4G23620 329 / 2e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10009338 [exp] 146 / 7e-43 AT5G66860 297 / 4e-102 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10019634 [exp] 143 / 1e-41 AT5G66860 293 / 8e-101 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01386 [poplar] [flax] Ribosomal_L25p Ribosomal L25p family
Representative CDS sequence Show only first row Show all	>Potri.001G097801.1 pacid=42788165 polypeptide=Potri.001G097801.1.p locus=Potri.001G097801 ID=Potri.001G097801.1.v4.1 annot-version=v4.1 ATGTATAGATTCCAACGTCTAACACTCACCACCAAAACCCTCCACCGCCACCACAACAACTGCTTCTTCTCTCAAGCTGCCGCTGCTATAATCGAAGAAC CACCCTCAATCCAAACCACCCTACTCGATGGATTACCAGAACCTGGCCCATTAGAAACAATATTCGCAATCCCGCGCTCAGATTCAGGCAAAAATGTGTC AGCAAAAGAGCGAAAAGCGGGGAGAGTACCAAGTATCGTTTTTGAACAAGAAGATGGACATCATGGCGGTAATAAAAGGCTGATTTCAGTGAAAAAAAAT CGAATTAGGAACTTGGTCAATGAGCTTGGTAGACCCTTCTTTTTGTCCAGGCTTTTTGAGCTTGATGTCAGGCCTCAGTTCGAGTCTGATGAGGTTATAG AAAAAGTTCGAGTCTTGCCGAAAGCGGTACATCTGCATGCCGGAACAGATGAGCCGCTTAATGTGACCTTTATAAGGGCACCTTCTCATGCCTTGTTGAA GGTCGATATCCCGCTTGTTTTCAGAGGAGAAGACATATCTCCTGGACTAAGGAAAGGTGCTTATTTAAATACTATTAAGAGGACTGTGAAGTTCGTTTGC CCTGCCGATTTAATTCCTCCATTTATTGATGTGGATCTCAGTGAATTGGACGTGGGCCAAAAGTTGCTCATGGGAGACCTCAAGGTACATCCAGCTTTGA AGCTTGTTCAGTCAAAAGAACTACCTGTCGTTAAGATTTCTGGAGGCAGGGCTTCTGACAAGAAATCAAAATAA
AA sequence Show only first row Show all	>Potri.001G097801.1 pacid=42788165 polypeptide=Potri.001G097801.1.p locus=Potri.001G097801 ID=Potri.001G097801.1.v4.1 annot-version=v4.1 MYRFQRLTLTTKTLHRHHNNCFFSQAAAAIIEEPPSIQTTLLDGLPEPGPLETIFAIPRSDSGKNVSAKERKAGRVPSIVFEQEDGHHGGNKRLISVKKN RIRNLVNELGRPFFLSRLFELDVRPQFESDEVIEKVRVLPKAVHLHAGTDEPLNVTFIRAPSHALLKVDIPLVFRGEDISPGLRKGAYLNTIKRTVKFVC PADLIPPFIDVDLSELDVGQKLLMGDLKVHPALKLVQSKELPVVKISGGRASDKKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Potri.001G097801 [exp]	0	1
AT4G36420			Ribosomal protein L12 family p...		Potri.007G019100 [exp]	2.23	0.8374
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	3.60	0.8044	RAD23.1
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Potri.017G014500 [exp]	4.89	0.8488
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	6.00	0.8432
AT5G47455			unknown protein		Potri.001G333800 [exp]	6.92	0.8201
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	8.00	0.8583	TUFA.4
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	10.29	0.7642
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	10.39	0.8003
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	12.40	0.8232
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.003G186600 [exp]	14.49	0.7456	RAD23.2

Compare expression of checked genes

Potri.001G097801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.