Plant FIBer expression Database

Potri.001G097901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13130 393 / 3e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26140 374 / 3e-124 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26130 375 / 4e-124 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT5G17500 338 / 2e-110 Glycosyl hydrolase superfamily protein (.1)
AT5G16700 318 / 5e-103 Glycosyl hydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G183400
[exp]
375 / 7e-124 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.010G049700
[exp]
372 / 4e-123 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.010G049800
[exp]
313 / 2e-101 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024686
[exp]
449 / 7e-153 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10032312
[exp]
388 / 5e-130 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006462
[exp]
375 / 5e-124 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10011404
[exp]
375 / 7e-124 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006461
[exp]
369 / 2e-121 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10011403
[exp]
361 / 3e-118 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10005737
[exp]
47 / 7e-07 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.001G097901.1 pacid=42791095 polypeptide=Potri.001G097901.1.p locus=Potri.001G097901 ID=Potri.001G097901.1.v4.1 annot-version=v4.1
ATGAAGATGCTAGGCAAGAATTTTCAAGCCATTCTCCTGTTTAGCTTTATTCTTTATGCAGTCCCATGTTATTCTCTTCCGTTGAAAACCCAAGGTAGAT
GGCTTGTTGATGAAAGAACAGGAGAAAGAGTGAAGCTACACTGTGCTAATTGGCCAGCCCATGTTTTTCCAATGTTGGCAGAAGGTCTTGATAAGCAACC
CTTGCCATTCATTGCATCTGAAATTGTAAAGAACAATTACAATTGCATTCGTTTCACATTTTCTATACACATGTTCACTAGATATGCAAATCTTACAATT
GAGGAATCCTTTGATCGTCTAAACCTGAAGAAAGCTAAGGCTGGAGTGATCAAGCACAACCCTTTTGTGCTAAAAATGACTGTCCCTCAGGCCTATGAAG
CTGTTGTTGATGTTCTTGGGTCTTATGGTATAATGATTGATGCTGATAACCATATAAGCGAGCCAATTTGGTGCTGCAGCAATGATGATGAAAATGGCTT
CCCAAATGATCCCCACTTTGATCCTGAGGAGTGGATAGAAGGCCTCAAATTGGTAGCCCAGCGCTTTAAGGGAAAAAGTCAGCTCATCAGCATTGGATTG
CGCAACGAACCCCGCGGCAAGAATCAAAATGCAACTCTCTGGTTTGATCATTACATCATGGAAGCAGCAGCACAGGTTCACCAGGCCAATCCAGATGTGC
TCGTGATTGCTTCAGGCTTAAATTTTGCCACGGACTTGACATACTTCAAGAAACATTCCTTAAAATCTAATTTTGATAATAAGTTGATTTTCGAGGGACA
CTCGTACTCATGGGGTGGAAAGGGCAATCCCTGGGTGGATGGATCAGTAAATAAAGCTTGTGCAGATAAGATTGGATCACTAAACAACAATCTTGCCTTT
GTTACTGATGGTGAGAATGCAGTTCCTTTATTTTTTAGTGAATTTGGTATCGATAGGAAACAAATGCCTGCTGGTGATGATAGATTCTTGAGTTGTTTTT
CTACTTGGGCTGCTGAGAAAGACTTGGATTGGGGCTTGTGGGCTTTACAAGGAAGTTATTATCTTAGACAAAACGTCACTAACATGGAGGAATATTTTGG
AGTCCTGGAAATCGATTGGGATCGTGTAAAAAACCCAGAAGTTGAAAGGAGGTTGGGGCTTCTTAAGCAAACACTTCTAGATCCAAAATCAACGGCTCCT
CTGAACTACATTATGTACCATCCACAAAGTGGTGCTTGTGTAGGTGAAGGGATGGATGGGCAGATTCGTGCAGGCAATTGCAAGGGCTTGACTAGGTGGA
CCCACAATGGACATGAAGGTCCCCTTGAGTTGAAGCGAACTGGGCTGTGCCTCAAAGCCATTGGCGATGGACTGCCACCAATCCTAACCCCCGACTGCTC
ACAAACCACTTGGAAACCAATCTCCGCCAGCAAACTTCACTTAGCTTCCAAAGATCACAAGGGAGAATATCTGTGCTTACACTTGGAGCCTCCATTTGCT
GGAAATATCGTAACCAAGAAGTGCATCTGCGTTGGAGGTGATCCTACGTGCAAGGATAATCCAACAAGCCAATGGTTCAAGCTTATTGAAACAAATATTG
AGAATTAG
AA sequence
>Potri.001G097901.1 pacid=42791095 polypeptide=Potri.001G097901.1.p locus=Potri.001G097901 ID=Potri.001G097901.1.v4.1 annot-version=v4.1
MKMLGKNFQAILLFSFILYAVPCYSLPLKTQGRWLVDERTGERVKLHCANWPAHVFPMLAEGLDKQPLPFIASEIVKNNYNCIRFTFSIHMFTRYANLTI
EESFDRLNLKKAKAGVIKHNPFVLKMTVPQAYEAVVDVLGSYGIMIDADNHISEPIWCCSNDDENGFPNDPHFDPEEWIEGLKLVAQRFKGKSQLISIGL
RNEPRGKNQNATLWFDHYIMEAAAQVHQANPDVLVIASGLNFATDLTYFKKHSLKSNFDNKLIFEGHSYSWGGKGNPWVDGSVNKACADKIGSLNNNLAF
VTDGENAVPLFFSEFGIDRKQMPAGDDRFLSCFSTWAAEKDLDWGLWALQGSYYLRQNVTNMEEYFGVLEIDWDRVKNPEVERRLGLLKQTLLDPKSTAP
LNYIMYHPQSGACVGEGMDGQIRAGNCKGLTRWTHNGHEGPLELKRTGLCLKAIGDGLPPILTPDCSQTTWKPISASKLHLASKDHKGEYLCLHLEPPFA
GNIVTKKCICVGGDPTCKDNPTSQWFKLIETNIEN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13130 Cellulase (glycosyl hydrolase ... Potri.001G097901
[exp]
0 1
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050300
[exp]
4.00 0.9310
AT4G31980 unknown protein Potri.003G208100
[exp]
4.47 0.8968
AT4G34880 Amidase family protein (.1) Potri.004G171300
[exp]
6.48 0.9089
AT3G18080 BGLU44 B-S glucosidase 44 (.1) Potri.015G041300
[exp]
10.39 0.9179
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.014G020432
[exp]
14.69 0.8670
AT4G01070 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYL... Potri.014G041900
[exp]
14.86 0.8866
AT3G54220 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECRO... Potri.006G114200
[exp]
15.65 0.9071
AT1G03670 ankyrin repeat family protein ... Potri.019G101500
[exp]
16.88 0.9111
AT1G76770 HSP20-like chaperones superfam... Potri.005G192700
[exp]
17.14 0.8886
AT4G33790 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIF... Potri.004G185000
[exp]
19.13 0.8547

Potri.001G097901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.