Plant FIBer expression Database

Potri.001G098000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64080 145 / 8e-39 MAKR2 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
AT5G52870 59 / 3e-09 MAKR5 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G133500
[exp]
404 / 1e-137 AT1G64080 147 / 2e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Potri.012G035700
[exp]
142 / 5e-38 AT5G52870 115 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Potri.015G027500
[exp]
132 / 2e-34 AT5G52870 90 / 4e-20 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017532
[exp]
212 / 5e-63 AT1G64080 175 / 1e-49 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Lus10028754
[exp]
202 / 3e-59 AT1G64080 185 / 1e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
PFAM info
Representative CDS sequence
>Potri.001G098000.2 pacid=42791658 polypeptide=Potri.001G098000.2.p locus=Potri.001G098000 ID=Potri.001G098000.2.v4.1 annot-version=v4.1
ATGGAAGCTTTTAGCTTGCTCAGGTACTGGAGAGGTGGTGGCGGTGGTAGTGCTGCTATCGGTGGTGGTGGTGGTGGTGGGTGCGGTGGAGATGGTTATT
GTAACGTACGCGCCGCTAAAATTGTCACTGCCGTGTCTCCAAGCAGAGCGGAAACTGATGATGAGAATGATGACGATGATGGGCCTTTTTTTGACTTGGA
GTTTGCAGTTCCTGATGAAGAAGAGGAGGGAGGAGACGGCAAAGAAGCGAACAAAGGAAACAATGGGGCTGATTCTGAAGAGGAAAACGATGCTGCTGAC
ACTTCTGACGAGGATGAGGTTGAGGATGATGACATTGACGAAGAGAGGGAGATTAATTTCACTCTCTCTTCGGCTTCTAGCAATGACAGGAGTGATCTAA
ATCTTGCTCTTTCTCCTTCTGATGACTTGTTTTTCAAAGGAAGGCTTGTGCCCATTGAGCCATCTTCACTTGAGCCAAACTCAAAATCCTCTCAGTTCTC
GGTGTCATTTCTAAAATCTGCTGTAAAATTTCGCGTATTCATGTTGGGATTAAAGAAGAAACCAAACACTACAACAACAAATGAAAAGGCAGAAGCTAAT
GTGGTGCCGGCATTAGCTTCTTCTACTCCTGAACTGCAAGGGGAGAAAGATGAGGAAAATGGCAAGCAGAGTAAGCTTTTTACTGTGAAATTTAAGGTTG
AGGAAGTTCCTGTAATGTCTTTGTTTACTAGAGAGAATAGCAAAAGTATCAAGTCATCGCAGAAGCAGAATTCTACAGAAGAATCAACTGCTTCAGCTGT
TGGTGTTGCTTCTTCAGATGAGAAGCTGAAATTTTCAAAAGATGTAATGCAGAAGTACTTACAGAAAGTCAAGCCTCTTTATATCCGTGTTTCTAAACGG
TATGGAGAGAAGCTGAAATTCTCTGGTCAATTAAGTTTAGGCTCTGGGCAAAAAACACCGACTGCTCCGCCGCTATCCACGGTGACCCAGAAAACAACAA
CGGCTGATAAAGTTGAAAAGGAGAAGGAAAGTGTGGAAGATCCGGCAGTGGCAGTGACCGATCATAAGGGTCGAAAACAGGGGAATTTGCCTTCTGGGTT
GAGGGTTGTGTGTAAGCATTTAGGGAAAAGAAGATCAGCTTCGGCGGCGGCGGTGGCAGCGGCTCCTCCAGGTCCTGTTTTGTCAGAAAGGAGAGATGAT
TCGCTGTTGCAGCAACATGATGGGATCCAGAGTGCTATTCTTCATTGCAAGAGATCATTCAATGCTTCTCGAGATTCTGATTCTTCTGTGCTCTCAAGGT
CAGTGAGTGATCCTTCACATGAGAAATCAATAGAAATAATGTCAAGTCATCAGATCATGAAGGGAAAGGTTCTTCTGTGGACCCAAAGAAGGCAGGAAAA
TGAGATTGTTTGA
AA sequence
>Potri.001G098000.2 pacid=42791658 polypeptide=Potri.001G098000.2.p locus=Potri.001G098000 ID=Potri.001G098000.2.v4.1 annot-version=v4.1
MEAFSLLRYWRGGGGGSAAIGGGGGGGCGGDGYCNVRAAKIVTAVSPSRAETDDENDDDDGPFFDLEFAVPDEEEEGGDGKEANKGNNGADSEEENDAAD
TSDEDEVEDDDIDEEREINFTLSSASSNDRSDLNLALSPSDDLFFKGRLVPIEPSSLEPNSKSSQFSVSFLKSAVKFRVFMLGLKKKPNTTTTNEKAEAN
VVPALASSTPELQGEKDEENGKQSKLFTVKFKVEEVPVMSLFTRENSKSIKSSQKQNSTEESTASAVGVASSDEKLKFSKDVMQKYLQKVKPLYIRVSKR
YGEKLKFSGQLSLGSGQKTPTAPPLSTVTQKTTTADKVEKEKESVEDPAVAVTDHKGRKQGNLPSGLRVVCKHLGKRRSASAAAVAAAPPGPVLSERRDD
SLLQQHDGIQSAILHCKRSFNASRDSDSSVLSRSVSDPSHEKSIEIMSSHQIMKGKVLLWTQRRQENEIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64080 MAKR2 MEMBRANE-ASSOCIATED KINASE REG... Potri.001G098000
[exp]
0 1
AT5G16560 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-... Potri.015G031600
[exp]
3.31 0.9371
AT3G55950 CCR3, ATCRR3 CRINKLY4 related 3 (.1) Potri.001G252400
[exp]
3.74 0.9107
AT4G31980 unknown protein Potri.003G209300
[exp]
7.87 0.9276
AT4G37650 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM... Potri.007G132000
[exp]
8.66 0.9177
AT1G75820 ATCLV1, FLO5, F... FLOWER DEVELOPMENT 5, FASCIATA... Potri.002G019900
[exp]
9.48 0.9207 Pt-CLV1.1
AT4G00820 IQD17 IQ-domain 17 (.1) Potri.015G005900
[exp]
9.59 0.9203
AT2G35640 Trihelix Homeodomain-like superfamily p... Potri.012G117500
[exp]
14.07 0.9146
AT2G22840 GRF ATGRF1 growth-regulating factor 1 (.1... Potri.002G115100
[exp]
14.49 0.8985
Potri.017G142923
[exp]
15.49 0.9094
AT1G76420 NAC NAC368, CUC3, A... CUP SHAPED COTYLEDON3, Arabido... Potri.002G005800
[exp]
17.32 0.9016

Potri.001G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.