Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64050 217 / 3e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133100 [exp] 887 / 0 AT1G64050 225 / 4e-64 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G098500.1 pacid=42790698 polypeptide=Potri.001G098500.1.p locus=Potri.001G098500 ID=Potri.001G098500.1.v4.1 annot-version=v4.1 ATGGATGCGTCGGTGGAGGTGAATTATCCGGTGGATGTTGTTGTTGCGGCGGCGAAGAAGAAAAAGAAGAATTTTGTTATGGGATCTGATGAGGTGTTTG GTAGACATAATAGTAATAGTAATAATAATAATAATAGGGTTTCAACGGTTGCTGTTAAAGAAGTTGAGGTTGAGGAGTCGATTTTAGTTAGCCCTAGAGT AGCTGATGCTGCTTCGATTCAGCAGTGCAGCTCTTTGTTTGCTCAAAAAGATGAAACGAGCTCAATCACCGCTTTTGAGTCAACTTCATGGGAGAGGGTT TTACCTTTGGAACACTGTGAGCAAGTAATTCAGATGCCTAGCTTACCTATTAGAGACATTTCTGAACAACTTCACTGTGTTGGCTCAAATGGGCCTTCAT GGATTCCTAGGCCTGAAGAAGTGCAAGTGCAAAGAAGAGGAGGGAAAGTGTCAAGAAGTAGCAGTGGTTGCTCTAAGAGACCACGATTATCTCCATCGGA AGATTCCACCGGCCCAGCTGTTGTTGACAACTCAAAGGAATCGTCTGATAAGCTAGGTTCAAATCCAACCAAGAGTGACTCTCATGAAAAAACTCAATCG GCAAAACAAAAGAACAACTTTGGCAGCAAGCGAGGTGAAAGGAGACACTCTAGAGTTACTGTGAAGACTAAATATGATTCCTTCTCTGTTAAGGCGGGTT TGTCGAGCTTTGGTTCAGCTGCTGGAGGGAACAGCTTTTTTGGACTATGTGGTTTGAAGGCGGATGTTCATGACATCACAAAGCCTGTAGATGATATATC ATTGAATGATCTTCTCAATGGCACTTATGACTGTCCTAGCTTAGGCAAAGACAAGGGGAAGAAAGCTGCAAATACGACTGAAAATTTTCTGCATTCAGTT AGAAAAGCCTGCTCAGTACTCCAGTTCCCCAGGCCTGCACAGTTCCAGAATTTTGCCGAGATGGATGTCTGCTCCAGTGAGAAAATGCCCACATGCCCAT CTAACTCTGTTTCTATAGTGGAAAATGGAGATTCTTCAGCAACTAATATGTCTTCTTCGTCTAACAAGATACAGGATTCTTGCAACAGGCCTGAAACTCC TGCTAATTTGCTTGATTTTTCGTTTGACCAACCTAAAGATACTTTGGAACATTTGGCACTTCCTCCACCCAAGGATCTGGAGTCCTTGCTTCTGGATGCA ACCAAGCATGCTGCATCATCGAGGCATGTCCCTGATCCACGTCCAGGAAAGACAACATCTCGCCGAGCTAGCTTGCCAGCTTTTCCCTGGTCACACACTT TCAGCGGGCACTCCAGAACTAATTCTGATTCAGTTAAATGTTTGCCAAGTAGGAGTACATGCCAAGGTAGATGGGTAAGAATAAGAGACAGTTTCAATTC TCCTGGGTCTGCCTCTGATTGCTTTATGAACTTGGAGTCTCTTGCTTATGATGAGACCTTAGTTCCTTCACAAGGACCAAAGTTGGCTGTTGTAGGAAAT AATGTTGATTCATTGAAACCTTGTTGTGGGTGGAGCTTGTCATCATCACTGGCTTCTATAACATCCCATGCTCTGTTAGAATCTGAAGTTGACATAAAGT CTAAAGGAAAAGATGAACTTTGTCCAATACTGTTGGAGGCTGCTAAAATCTTGTATGGCATTGCCACTCAAATGGCGAGGCAAAACCAAAATGGAATATC AAGGTGCCCTGAGAAGCTCTCACAAAAGGCTATGAAAGCTCGCAGGACAAAATCAAACGAGAAACGTGAAGATGTATCTGCAGCATCAACTTCGTCAATG GGTGGTGTGGACCAGATAACGCCCTCAAAGAGGCCTAAACTCTCAACAATTGGGGACAAAAAGGATCATGGTCATATCAACGGTCTTGGGAAAGGGGCAA TAAATTGGTCTACTCCAAAATCTAGTAGATCATCTCCCAATAAATCAATTGGAGACTCAATTGCAGAAAGTAGACATTCTGCTGCTTACATCTTAAAGCA AGCGTGTATGATGCCCCCACCTGCAAAAGTTCTGCACAGGACTTACAATGGTCAGCAAAAGGTTCGTAAATAG
AA sequence Show only first row Show all	>Potri.001G098500.1 pacid=42790698 polypeptide=Potri.001G098500.1.p locus=Potri.001G098500 ID=Potri.001G098500.1.v4.1 annot-version=v4.1 MDASVEVNYPVDVVVAAAKKKKKNFVMGSDEVFGRHNSNSNNNNNRVSTVAVKEVEVEESILVSPRVADAASIQQCSSLFAQKDETSSITAFESTSWERV LPLEHCEQVIQMPSLPIRDISEQLHCVGSNGPSWIPRPEEVQVQRRGGKVSRSSSGCSKRPRLSPSEDSTGPAVVDNSKESSDKLGSNPTKSDSHEKTQS AKQKNNFGSKRGERRHSRVTVKTKYDSFSVKAGLSSFGSAAGGNSFFGLCGLKADVHDITKPVDDISLNDLLNGTYDCPSLGKDKGKKAANTTENFLHSV RKACSVLQFPRPAQFQNFAEMDVCSSEKMPTCPSNSVSIVENGDSSATNMSSSSNKIQDSCNRPETPANLLDFSFDQPKDTLEHLALPPPKDLESLLLDA TKHAASSRHVPDPRPGKTTSRRASLPAFPWSHTFSGHSRTNSDSVKCLPSRSTCQGRWVRIRDSFNSPGSASDCFMNLESLAYDETLVPSQGPKLAVVGN NVDSLKPCCGWSLSSSLASITSHALLESEVDIKSKGKDELCPILLEAAKILYGIATQMARQNQNGISRCPEKLSQKAMKARRTKSNEKREDVSAASTSSM GGVDQITPSKRPKLSTIGDKKDHGHINGLGKGAINWSTPKSSRSSPNKSIGDSIAESRHSAAYILKQACMMPPPAKVLHRTYNGQQKVRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64050			unknown protein		Potri.001G098500 [exp]	0	1
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	1.73	0.8611
AT1G64050			unknown protein		Potri.003G133100 [exp]	4.89	0.8084
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	5.65	0.8019
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	5.83	0.8599
AT1G19010			unknown protein		Potri.001G350000 [exp]	7.93	0.8199
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	8.00	0.8474
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	8.94	0.7765
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	10.09	0.8545	GTE910
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	10.67	0.8213
AT1G17520	MYB		Homeodomain-like/winged-helix ...		Potri.006G147400 [exp]	12.24	0.7874

Compare expression of checked genes

Potri.001G098500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.