Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11270 1536 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 49 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 47 / 0.0001 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132900 [exp] 2603 / 0 AT4G11270 1541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 47 / 0.0001 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 45 / 0.0003 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.014G077800 [exp] 45 / 0.0004 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.013G079600 [exp] 45 / 0.0006 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001301 [exp] 47 / 0.0001 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10012706 [exp] 47 / 0.0001 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G098700.1 pacid=42792910 polypeptide=Potri.001G098700.1.p locus=Potri.001G098700 ID=Potri.001G098700.1.v4.1 annot-version=v4.1 ATGAAGTGCCGATCCGTGGCGTGTATATGGCCGGACACACCTCCATCTCACAAAGTCACCGCCTCCGCCTCACTTAACCACCCGCCAACCCTTTACACTG GTGGATCCGATGGCTCCATTCTCTGCTGGAACCTCTCTTCTTCCGATTCCAACACGGAAATTAAACCGGTTGCAATGCTGTGTGGCCACGCTGCACCGAT AGCTGATCTTAGCATTTGTTGTCCCATGGTGGTCACGGGAGAAGATACCAAAACGAAATGTTCGAGTAATGGTGATGGAAGTTCTGCTTCCGATACTTAT GATGCGTTAATTAGTGCGTGTAAATTTGGTGTATTGTGTGTTTGGAGTAGAGGAAGTGGACACTGCCGGCGTAGAAGGAAACTCCCCCCTTGGGTTGGAA GTCCGTGTTTTGTTCGGACATTGCCTACGAGTTCGAGATATGTGTGTATAGGGTGCTGTTTTATTGATGCTGCGCATTCATCAGATCGTCATTCTATTGA TTCTCTTGAAGGGGGTGAGGTTTCAGTGGATAAAGGTTGTCTGCCTGGGAAACATCCGAAGAGTACTGTTGTGATTGTTGATACGTATAGTCTCACTATT GTACAGTCTGTTTTTCATGGGAATTTATCAATTGGGCGATTGGATTTTATGGATGTAGTTTTGTTGGGTGAAGATGGGGAGAAGCATTCTGTTTTTATCG CTGATTCATCTGGTAAGGTGGAATTGGTTCCGATCTTGAAGGAGTCAAATCCAGTTGGTGATGGTGGGAGTGGCTTGCGTAAGAGTTCTCAGCTGGAAGT GGTTAATTGGGGCAATGGTTCGAGTAAAGAAGGACAGGTCGTGTCAAGTGCAACTCGTGGGAACCTTATTGCTCTAGTGTTAAAAACACGTTGCATATTT AGGCTATTGACCAGCGAAACTACAATTGGAGAGACTTCTTTTGCTGAAGATATCCTTTGTGTCGAGGACCATTTTGCCCAATCACATGTTTTGGGAGGCA TGTTTCTTGAAATTGGTGAAGCTGGTGAAATGCAGAGTGCCCAGCACGATAATTTCTGTGGACATTTTGCTGTCTGGAATAGTAGAGGTTCTGCTATTGT ATATATTGTATCATATCTGAACAATGTATTTAAATCTGAAACTCTCTGGGAGATTCCTGCTGCTTCTTATCCTGCTGATGTGAGATTGTTGTTTTCTTTC ATTCAGTTGAACAATTATCTTCTTCGAATTGAATCTGTTTGCTTTGATGACGAAGAGCCTTTACAGTGGAAACCCCATGTCACAATCTGGTCTCTATGTC GAAAGCATGATAACCATGGAAAGTCATCCCAACAACGCAAAATGCTTGGTGAAAGCGATTTTTTTGCTGATTGGGTCTCAAACTCTAGCCTCCTTGGAAT TAATAACCAAGGTGTCGGGAAAATGAGGATAACTTCTGCTCAAAGCTCTGTTCCAAATTCAAGAACTGAAAATAATAAACATGCTGATGAAAGTTTTGGT TTTGTGTGCAACGGAAAAACTGTATCCTCTTCCATGGTTGTTTCTGAAAATCATTTTTTCCCTTATGCTGTTGTATATGGCTTCTTTAATGGTGAAATAG AAGTTGTACGATTTGATATGCTTCTTGAACCAGATTCTCACGGTGAAAGTCCACGTAATGATGTAGATTCTCCTGTATCCAGGCAATATTTTTCAGGGCA CACAGGCGCTGTGCTTTGTTTGGCAGCGCATCGGATGTTGGGTGCTGCCAGAGGATGGAGTTTCAGTCATGTTTTAGTTTCTGGAAGCATGGACTGCACA GTTCGCATCTGGGATCTTGACACTGGAAACCTCATTACTGTGATGCACCAACATATAGCTTCAGTGCGTCAAATAATCTTTCCCTCAGCACGGACAGAAC GTCCTTGGGGTGATTGCTTTCTCTCTGTCGGGGAGGACTCATGTGTTGCTCTAACTTCTCTTGAAACTTTGCGTGTAGAGAGAATGTTTCCAGGGCACCC AAGCTATCTTGAAAAGGTTGTGTGGGATGGTGCAAGAGGTTACATTGCATGTCTCTGCCAGAGCCATTTAGGATTATCTGATACTGTCGATGCTCTGTAC ATATGGGATGTAAAAACCGGTGCCCGAGAGCGCGTTCTTCACGGAACAGCCTCTCACTCAATGTTCGATCATTTTTGTAAAGAAATCAGTGTGCATTCTA TATCTGGTTCTATATTGAATGGAAACACTTCAGTGTCCTCATTGCTTCTTCCAGTAATTGAAGATGAAACCTTCTCTCAATCCCACTCAAAGCTTCTGGA GAAGAAGGTCAGCTCACCAAGAATGATGTCAAACATGAAAAATGCAATGGACCCCACTGCTTCCCAAGGACAGGTCAAGAAAGGAATATTACCAACCACG CCATCTTTCCTACAAATGAACAAGCATGCCATTGGATGCACTTGCCCGTTCCCTGGGATTGCAGCCTTGAGTTTTGACCTTGCGTCCTTGATGTTTCCTT TTCAGAAACATGAGCCGGCAGCTAATGGTGTTGTTAAGCAAGAGAATATAGATGTCAAGGAACAGGGAACTAGCACCCCAAGAACTCAGGATATGAACTT TGATGGTGGTTCTGATAAGAATGGGACCTCAACTGATACCATTGAGGAGCATGACTGGATTAGGTCACTAGAAGAATATTCACTTCGATTTAGCTTGTCA TTCTTGCATTTGTGGAATCTGGATAGTGAGCTTGATAAATTGCTAGTAACAGAAATGAAGCTAAATCGGCCAGAGAATTTGATCATAGCTTCTGGTTTGC AAGGTGACAAGGGGTCTTTGACCCTGTCATTTCCTGGTTTGAGTTCTATTCTTGAGCTCTGGAAATCATCATCAGAGTTTTGTGCCATGAGGTCACTTAC GATGGTGTCCATTGCCCAACGCATGATTAGCCTGTCTCGCTGCAGTTCACCAGTCACCAGTGCCTTAGCAGCATTTTACACTCGGAGTTTTGCAGACAAA ATTCCAGATATAAAGCCCCCTTTACTCCAGCTTCTGGTTAGTTTTTGGCAAGATGAAAGTGAACATGTACGCATGGCTGCCCGCACTTTATTCCATTGTG CTGCTTCACGGTCTATCCCACTCCCTCTATGTGGTAAAAAAATGAATGCACACAGAAAACTTGTGAGATCTTTGAGTGAAATTAGAGACAATGAAGCTGA AGTTTCAAATGTAGGAGGGACATCTACAAATGATTTGGCATCTGACATGTCACCTGAACCACAAGCAACCCCTCAGGCTGTAGAATTTCCTGACAAGTCA CTGGAAAAACAGGGAATTACTGAAGCAGCAAGATCCAAAATACTTGATTGGCTAGAGTCATTTGAAATGCAAGACTGGATTTCATGTGTTGGAGGGACAA GTCAAGATGCAATGACATCTCACGTCATTGTTGCAGCTGCATTGGCAGTGTGGTACCCTAGCCTTGTCAAACCAAGTATCGCCACATTGGTTGCTCATCC TTTAATTAAGTTGGTTATGGACATGAATGAAACATATAGTTCCACTGCGGCAGAGCTCCTTGCAGAAGGTATGGAGAGTACATGGGAGGCATGCATTAGT TCTGAAATACCTCGCCTCATTGGGGATATATTCTACCAGATAGAGTGTGTAAGTGGTCAATCTGCCAACTCTGCTGGACATCATTCATCTGTACCATCTT TCATTCGAGAGACTTTGGTTGGGATACTTTTTCCAAGTTTAGCTATGGCTGATATACCAGGGTTTTTAACTGTCATAGAGGGCCAAATTTGGTCTACTGC ATCTGATTCGCCTGTTCATCTGGTATCCCTCACAACACTAATAAGGGTTGTGCGTGGTTCTCCACGGCACCTGGCTCAATATCTTGATAAGGTGGTTAGC TTCATTTTACACACTATGGATCCTGGCAACTCAATCATGCGCAAAACTTGTCTTCAAAGTTCAATGACAGCACTAAAGGAAATGGTACAGGCATTTCCTA TGGTAGCCCTGAATGACACATCTACCAGATTGGCTGTTGGCGATGCAATTGGAATGATAAATAATGCTACTATTTCAGTTTATGACATGCAAAGTGTGAC AAAAATAAAAGTCTTGGATGCATGTGGACCCCCTGGTCTTCCAAATTTGCTTTCAGGAGCATCAGAAATGGCAGTGATCACTGTAATATCAGCTTTGAGC TTTGCCCCTGATGGAGAGGGACTGGTTGCATTTTCTGAGCATGGCTTGATGATAAGATGGTGGTCACTAGGATCTGTGTGGTGGGAGAAACTTAGTCGAA ACTTGGCTCCTGTCCAGTGCACCAAACTGATATTTGTACCTCCATGGGAAGGATTTTCACCCAATTCTTCTAGGTCTAGCATAATGGCAAGCATATTGGG GCATGATAACCAGGCCAATTTGCAGGAGAAAGCCCGGGATTCGACTTATGCAGACAATTTGAAATTGTTAATACATAATCTGGACCTCTCTTACCAGCTA CAATGGGTCGGCGAACGTAAGGTACTTCTATCAAGGCATGGCCTGGAGTTGGGAGCTTTTCCATTGTAA
AA sequence Show only first row Show all	>Potri.001G098700.1 pacid=42792910 polypeptide=Potri.001G098700.1.p locus=Potri.001G098700 ID=Potri.001G098700.1.v4.1 annot-version=v4.1 MKCRSVACIWPDTPPSHKVTASASLNHPPTLYTGGSDGSILCWNLSSSDSNTEIKPVAMLCGHAAPIADLSICCPMVVTGEDTKTKCSSNGDGSSASDTY DALISACKFGVLCVWSRGSGHCRRRRKLPPWVGSPCFVRTLPTSSRYVCIGCCFIDAAHSSDRHSIDSLEGGEVSVDKGCLPGKHPKSTVVIVDTYSLTI VQSVFHGNLSIGRLDFMDVVLLGEDGEKHSVFIADSSGKVELVPILKESNPVGDGGSGLRKSSQLEVVNWGNGSSKEGQVVSSATRGNLIALVLKTRCIF RLLTSETTIGETSFAEDILCVEDHFAQSHVLGGMFLEIGEAGEMQSAQHDNFCGHFAVWNSRGSAIVYIVSYLNNVFKSETLWEIPAASYPADVRLLFSF IQLNNYLLRIESVCFDDEEPLQWKPHVTIWSLCRKHDNHGKSSQQRKMLGESDFFADWVSNSSLLGINNQGVGKMRITSAQSSVPNSRTENNKHADESFG FVCNGKTVSSSMVVSENHFFPYAVVYGFFNGEIEVVRFDMLLEPDSHGESPRNDVDSPVSRQYFSGHTGAVLCLAAHRMLGAARGWSFSHVLVSGSMDCT VRIWDLDTGNLITVMHQHIASVRQIIFPSARTERPWGDCFLSVGEDSCVALTSLETLRVERMFPGHPSYLEKVVWDGARGYIACLCQSHLGLSDTVDALY IWDVKTGARERVLHGTASHSMFDHFCKEISVHSISGSILNGNTSVSSLLLPVIEDETFSQSHSKLLEKKVSSPRMMSNMKNAMDPTASQGQVKKGILPTT PSFLQMNKHAIGCTCPFPGIAALSFDLASLMFPFQKHEPAANGVVKQENIDVKEQGTSTPRTQDMNFDGGSDKNGTSTDTIEEHDWIRSLEEYSLRFSLS FLHLWNLDSELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFPGLSSILELWKSSSEFCAMRSLTMVSIAQRMISLSRCSSPVTSALAAFYTRSFADK IPDIKPPLLQLLVSFWQDESEHVRMAARTLFHCAASRSIPLPLCGKKMNAHRKLVRSLSEIRDNEAEVSNVGGTSTNDLASDMSPEPQATPQAVEFPDKS LEKQGITEAARSKILDWLESFEMQDWISCVGGTSQDAMTSHVIVAAALAVWYPSLVKPSIATLVAHPLIKLVMDMNETYSSTAAELLAEGMESTWEACIS SEIPRLIGDIFYQIECVSGQSANSAGHHSSVPSFIRETLVGILFPSLAMADIPGFLTVIEGQIWSTASDSPVHLVSLTTLIRVVRGSPRHLAQYLDKVVS FILHTMDPGNSIMRKTCLQSSMTALKEMVQAFPMVALNDTSTRLAVGDAIGMINNATISVYDMQSVTKIKVLDACGPPGLPNLLSGASEMAVITVISALS FAPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRNLAPVQCTKLIFVPPWEGFSPNSSRSSIMASILGHDNQANLQEKARDSTYADNLKLLIHNLDLSYQL QWVGERKVLLSRHGLELGAFPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	0	1
AT5G52950			unknown protein		Potri.012G033800 [exp]	3.16	0.7564
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G215700 [exp]	3.46	0.7366
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	3.74	0.7678
AT5G09760			Plant invertase/pectin methyle...		Potri.005G061500 [exp]	9.00	0.6742
AT1G51610			Cation efflux family protein (...		Potri.010G251300 [exp]	9.79	0.6612
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	11.95	0.6677
					Potri.003G193100 [exp]	12.96	0.6763
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	13.19	0.6771
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	14.49	0.6742
AT3G25680			unknown protein		Potri.010G131000 [exp]	15.90	0.6284

Compare expression of checked genes

Potri.001G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.