Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09740 668 / 0 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 665 / 0 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G02800 481 / 2e-166 ATCEL2 cellulase 2 (.1) AT3G43860 461 / 3e-159 ATGH9A4 glycosyl hydrolase 9A4 (.1) AT1G70710 458 / 1e-157 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G02290 458 / 2e-157 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G23210 450 / 8e-155 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G22880 438 / 5e-150 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 437 / 1e-149 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G39010 434 / 2e-148 ATGH9B18 glycosyl hydrolase 9B18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083200 [exp] 491 / 1e-170 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.006G219700 [exp] 475 / 2e-164 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.010G109200 [exp] 462 / 2e-159 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 460 / 5e-158 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 458 / 2e-157 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.008G132700 [exp] 456 / 4e-157 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 449 / 4e-154 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.004G162200 [exp] 448 / 6e-154 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.001G092200 [exp] 446 / 5e-151 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017525 [exp] 700 / 0 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10038223 [exp] 482 / 5e-167 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10008208 [exp] 474 / 8e-164 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 455 / 1e-156 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 453 / 8e-156 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10025880 [exp] 448 / 2e-154 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10018077 [exp] 439 / 4e-150 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10009794 [exp] 434 / 1e-148 AT3G43860 684 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10001833 [exp] 438 / 5e-148 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10042071 [exp] 434 / 5e-148 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.001G098800.1 pacid=42791699 polypeptide=Potri.001G098800.1.p locus=Potri.001G098800 ID=Potri.001G098800.1.v4.1 annot-version=v4.1 ATGGGAGTCATCGAGTTAAAAAAAATCATGGGGCATAGTGGAGTTCTCTGGGGTGTTGTATTGTATTGTGTCTTGGTTGGTCTTGCCATGGAAAGTGAAG AGCCATGCTCCAGAGCTACTAGCTACGGTGATGCCCTTGGCAAGGCGATATTGTTTTTTGAAGGGCAACGTTCTGGGGAACTGCCTTCCGACCAGCGAGT AAAATGGAGGGGAAATTCTGCTATCTCCGATGGCAAGCCTGAAAAGGTGAATTTAACAGGAGGCTACTATGATGCTGGGGATAATGTTAAATTTGGATGG CCAATGGCATTTACTGTTACTTTATTGAGCTGGGCTGGAATTGAGTACCAGAAAGAGATATCTTCTGTCAACCAGCTTGGTTATCTCCACACTGCAATCC GTTGGGGCACTAACTTCATTCTGGAATGTCATACTTCATCCACAGCATTTTACACCCAGGTTGGGGATGGAAATGCTGATCATCAATGCTGGGAACGTCC TGAAGATATGGACACTCCTCGAACACTCTACAAGATAACTCCAAATTCACCAGGAACTGAGGCTGCAGCCGAGGCATCAGCCGCTCTTTCGGCCGCTTCA ATTGTTTTTAAGGCTGTTGACCCCAGCTATTCCACCAAGCTATTACAACAATCACAATCATTGTTTGATCTGGCAGACAACTATAGATCATCTTTTAAAG ATTCTTGCCCTTTCTACTGCTCATTCTCAGGCTATCAGGATGAATTGTTGTGGGCTGCAACTTGGCTATACAAGGCAAGTGGAGAGAACAAGTACTTGAG CTACATCTCAAGCAATAAAGGATGGAGTCAGGCAGTGTCAGAATTCAGTTGGGACAACAAATTTGCCGGAGCTCAGACATTACTTGCAAAGGAGTTCTAT GGTGGGAAGCAGGATTTCGACAAGTTTAAGAGTGATGCAGAGTCATTTGTATGTGCATTGATGCCAGGGAGTAGTTCTGTACAGATTAAAACGACTCCTG GTGGGCTTCTGTATACTAGAGATAGTTCTAATTTGCAGTATGTCACAAGCTCTTCCATGCTGCTATTTATCTACTCCAATACCTTGACAGCAGCTCATGT TAGTGGAATCCAGTGTGGCTCTGCACATTTCTCTGCACTTCAGATTAAAGCCTTTGCAAAATCACAGGTGGACTATATACTTGGGAGCAACCCCATGAAG ATGTCATATATGGTGGGGTTTGGCAGCAAATATCCAACTCAAATGCACCATAGGGGCGCATCCATCCCCTCAGTCCAAGCTCTCCCATCAAAGGTTGGCT GCAATGATGGCTACTCTAGTTATTACTTTGCTAGTCAACCAAATCCAAACACACATGTAGGTGCCATTGTCGGAGGTCCAGATTCAAATGACCAGTACAA AGATTTAAGATCAGACTACTCTCACGCTGAACCTACAACTTATATGAACGCAGCTTTCGTGGGCTCAGTGGCTGCTTTAGTAGCTGAAAGCAAAGCAGAC TGCCCGTCACAGCTGTGGCAGCTGACTGGAAACAAGAAGGTGGCTGATTACATGTAG
AA sequence Show only first row Show all	>Potri.001G098800.1 pacid=42791699 polypeptide=Potri.001G098800.1.p locus=Potri.001G098800 ID=Potri.001G098800.1.v4.1 annot-version=v4.1 MGVIELKKIMGHSGVLWGVVLYCVLVGLAMESEEPCSRATSYGDALGKAILFFEGQRSGELPSDQRVKWRGNSAISDGKPEKVNLTGGYYDAGDNVKFGW PMAFTVTLLSWAGIEYQKEISSVNQLGYLHTAIRWGTNFILECHTSSTAFYTQVGDGNADHQCWERPEDMDTPRTLYKITPNSPGTEAAAEASAALSAAS IVFKAVDPSYSTKLLQQSQSLFDLADNYRSSFKDSCPFYCSFSGYQDELLWAATWLYKASGENKYLSYISSNKGWSQAVSEFSWDNKFAGAQTLLAKEFY GGKQDFDKFKSDAESFVCALMPGSSSVQIKTTPGGLLYTRDSSNLQYVTSSSMLLFIYSNTLTAAHVSGIQCGSAHFSALQIKAFAKSQVDYILGSNPMK MSYMVGFGSKYPTQMHHRGASIPSVQALPSKVGCNDGYSSYYFASQPNPNTHVGAIVGGPDSNDQYKDLRSDYSHAEPTTYMNAAFVGSVAALVAESKAD CPSQLWQLTGNKKVADYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Potri.001G098800 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112600 [exp]	1.00	0.8768
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.007G088700 [exp]	5.74	0.8280
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	7.07	0.8659
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Potri.003G061700 [exp]	9.38	0.7678
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	16.58	0.8462
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G183000 [exp]	21.21	0.8422
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	21.90	0.8041
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	22.44	0.8464	Pt-SYNC2.1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	24.12	0.8486	Pt-VHA1.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	25.69	0.7792

Compare expression of checked genes

Potri.001G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.