Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01250 138 / 2e-38 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G52830 134 / 2e-36 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G23550 133 / 2e-36 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT5G45050 106 / 4e-25 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G34830 100 / 9e-24 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 100 / 2e-23 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT1G29280 85 / 6e-19 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 81 / 3e-17 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT5G45260 75 / 1e-14 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G31550 74 / 1e-14 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132700 [exp] 432 / 8e-153 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.014G090300 [exp] 141 / 3e-39 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.002G164400 [exp] 138 / 7e-38 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.004G072000 [exp] 120 / 9e-31 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.017G149000 [exp] 120 / 1e-30 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.001G460600 [exp] 105 / 2e-25 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G157100 [exp] 104 / 6e-25 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.002G195300 [exp] 82 / 4e-18 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Potri.014G119800 [exp] 82 / 5e-18 AT3G58710 124 / 7e-34 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032303 [exp] 148 / 3e-42 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10024676 [exp] 134 / 4e-37 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10007907 [exp] 128 / 6e-34 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 121 / 2e-32 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10039295 [exp] 119 / 9e-31 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 119 / 1e-30 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10038426 [exp] 105 / 3e-26 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 94 / 6e-21 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10007305 [exp] 80 / 1e-17 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10026936 [exp] 82 / 3e-17 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G099001.1 pacid=42791425 polypeptide=Potri.001G099001.1.p locus=Potri.001G099001 ID=Potri.001G099001.1.v4.1 annot-version=v4.1 ATGTCGAGTGAATCTGTTTGCATGGAGGAAAGCTGGGATCTGCAAGCTGTGGTAAGGTCAGGATGCAGTACTAATTATCAAGAGTTTTCCAACATCATGA ACAACCCACCTTCGTTATTTGCTCCTCTGAGTTTTGATCAACACGAGCTTTTAAATTCCCAAGAAACTTATGAAACCCCAACTGATTTTGATGAACTAGA TGGCCTTTACAGGCCCTTCTACCCTGTGTTGCACCAAACCCTTAATTCCTCACAAAACAATATCCTTGGTACCTGTACCAACACCACATCCATGTCTGTT CGCAAAGAAGTAAAGGAGCGACAAAAGGTGCAGAAAAAGAAACCTCTTTCTGAACCTGCTACCTGTCCAAATAGTAGTAATATTGATGCCACTAGTGCAA CCAAATCAAAAAGGAGGGAGAATCAGCACAAAAGAGTGGTTCAACATGTGAAAGAAGATGGCCTCTCTTCTGACATGTGGGCGTGGCGCAAGTATGGGCA GAAACCCATCAAGGGATCCCCATATCCAAGGAGTTACTATAGATGTAGCAGTCTAAAAGGATGTTTGGCAAGAAAACAAGTGGAAAGAAGCAGTACAGAT CCATCAATATTTATCATAACCTACACAGCTGAGCACAGCCATGCCCATCCTACTCGAAGAAGCTCACTCGCTGGTAGCACCCGAATTAAGCGTGATGCTA TTAAAGGAACCACTCCCAACATTGAGCCCAACATGCCAACAATCAAAGACCAACGTTCGCCGAATTTCGATGGGCTTATCTCTCCAACAACCCCTTCAAT GACTTCCACTGAAGATGAATTAGTGCAAAACCTGAGTATTAAGAATGAGGAATTATTAGATCAAGGGCAGATTTTGGAAGGAAATGAAAGCAAAGAAATT TCCTTGCCAGATTTAGTATTCAGCGATGATTTATTTCCAACTTTAGAGGATTTGGAAGGGTTTCTTTTGGATCACTAA
AA sequence Show only first row Show all	>Potri.001G099001.1 pacid=42791425 polypeptide=Potri.001G099001.1.p locus=Potri.001G099001 ID=Potri.001G099001.1.v4.1 annot-version=v4.1 MSSESVCMEESWDLQAVVRSGCSTNYQEFSNIMNNPPSLFAPLSFDQHELLNSQETYETPTDFDELDGLYRPFYPVLHQTLNSSQNNILGTCTNTTSMSV RKEVKERQKVQKKKPLSEPATCPNSSNIDATSATKSKRRENQHKRVVQHVKEDGLSSDMWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQVERSSTD PSIFIITYTAEHSHAHPTRRSSLAGSTRIKRDAIKGTTPNIEPNMPTIKDQRSPNFDGLISPTTPSMTSTEDELVQNLSIKNEELLDQGQILEGNESKEI SLPDLVFSDDLFPTLEDLEGFLLDH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	2.23	0.9344
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	2.23	0.9053
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.011G130951 [exp]	3.16	0.8979
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	4.89	0.9061
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.016G069400 [exp]	6.16	0.8850
					Potri.012G124832 [exp]	6.63	0.9146
AT3G50900			unknown protein		Potri.007G022300 [exp]	7.48	0.9012
AT1G64300			Protein kinase family protein ...		Potri.003G137000 [exp]	7.93	0.8836
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032400 [exp]	9.38	0.8955
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Potri.005G075300 [exp]	9.59	0.8781

Compare expression of checked genes

Potri.001G099001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.