Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63940 794 / 0 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G52880 347 / 2e-115 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT5G03630 347 / 2e-115 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G27820 341 / 4e-112 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT3G09940 324 / 3e-106 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G17240 64 / 1e-10 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 64 / 1e-10 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G54660 51 / 1e-06 ATGR2, EMB2360, GR glutathione reductase (.1) AT5G08740 48 / 1e-05 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G24170 47 / 4e-05 ATGR1 glutathione-disulfide reductase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114800 [exp] 378 / 2e-127 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G346200 [exp] 348 / 5e-115 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.008G100800 [exp] 64 / 1e-10 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.015G037800 [exp] 56 / 4e-08 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.003G178200 [exp] 56 / 5e-08 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.010G151400 [exp] 55 / 1e-07 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028763 [exp] 791 / 0 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Lus10035593 [exp] 377 / 8e-127 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2) Lus10022260 [exp] 348 / 8e-115 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10013079 [exp] 320 / 2e-103 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10008633 [exp] 246 / 1e-76 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2) Lus10017102 [exp] 59 / 6e-09 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 59 / 8e-09 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 58 / 1e-08 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018770 [exp] 55 / 9e-08 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10032649 [exp] 54 / 1e-07 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G099600.1 pacid=42790641 polypeptide=Potri.001G099600.1.p locus=Potri.001G099600 ID=Potri.001G099600.1.v4.1 annot-version=v4.1 ATGTCTCAAGTACGTAGATTAATAATGGCGAGCGGCAGCAGTATATCCTCCAATCCGATGTCGTTTAAGCACGGCTTATCTCTCTGGTGTCCACAGTCAT CTCCTCTTCATCGAACTCTCCAGTCTTCTCCTTCTTCTTCAATCGGATTCAAGACTTTCTTCCGAAACCACGTCGTTGCTGCTTCCTCCTCCTCCTTCGC TAATGAAAATCGAGAGTATGTGATTGTTGGTGGTGGAAATGCAGCGGGATATGCGGCGAGGAGTTTTGTGGAGCATGGAATGGCTGATGGAAAGCTTTGT ATTGTTACCAGAGAGGCATATGCACCATATGAGAGACCAGCTTTGACTAAAGCATATTTGTTTCCACTTGATAAGAAGCCAGCGCGATTGCCTGGTTTTC ATACTTGTGTTGGATCTGGTGGGGAAAGGCAAACTCCAGATTGGTATAAAGAGAAAGGAATTGAGATGTTATATGAAGATCCTGTGACAGGCATTGATAT TGAAAAACAAACAGCAACGACGATATCAGGCAAGCTGCTCAAGTATGGAACTCTTATAGTTGCTACAGGATGTTCTGCCTCTAGATTTCCAGAGAAGATC GGAGGAAATTTACCTGGTGTTCACTATATAAGGGATGTGGCAGATGCTGACTCATTAATATCATCTTTGGAGAAGGCACATAAGTTGGTTATTGTAGGTG GTGGTTATATTGGCATGGAAGTAGCTGCAGCAGCTGTTGCTTGGAAACTTGACACTACGATCATTTTCCCAGAGAATCATCTTATGCAAAGGCTTTTCAC TCCTTCACTTGCTCAAAAATATGAAGAATTATATCAAGAAAATGGTGTTAAGTTCATAAAGGGAGCCTCTATCAAGAACTTAGAAGCCAGTTCTGATGGG CATGTAGCTGCCATTAAACTTGAAAATGGATCTACTATAGAAGCAGACATGGTAATAATTGGTATTGGGGCAAAACCAGCTGTTGGTCCCTTTGAAAGGC TGGGGTTAAATAACAGTGTTGGCGGAATACAGGTTGATGGTCAGTTCAGGACAGGTATTCCTGGGATTTTTGCAATTGGAGATGTAGCAGCATTCCCATT AAAGATGTATAACCGCATGGCACGAGTTGAACATGTAGACCATGCTCGGCGATCAGCTCAGCATTGTGTCAAATCACTACTTACTGCTCATACTAGCTCA TATGATTATCTCCCATATTTTTATTCGAGGGTTTTTGAGTATGAAGGGAGCCCAAGAAAAGTATGGTGGCAGTTCTTTGGAGACAATGTTGGAGAGACAA TTCAAGTAGGAAATTTCGATCCTAAAATTGCCACCTTCTGGATAGATTCTGGCAAACTGAAAGGAGTTCTCCTTGAAAGTGGAAGTCCTGAGGAATTTCA ACTACTCCCTGAACTTGCAAAGAGCCAGCCTATTGTTGATAAATCCAAGCTTCAGTCAGCATCTTCAGTTGAAGAGGCTCTGGAGATTGCTCGGACATCC CTCCAGGCTGCAGTTTAG
AA sequence Show only first row Show all	>Potri.001G099600.1 pacid=42790641 polypeptide=Potri.001G099600.1.p locus=Potri.001G099600 ID=Potri.001G099600.1.v4.1 annot-version=v4.1 MSQVRRLIMASGSSISSNPMSFKHGLSLWCPQSSPLHRTLQSSPSSSIGFKTFFRNHVVAASSSSFANENREYVIVGGGNAAGYAARSFVEHGMADGKLC IVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRFPEKI GGNLPGVHYIRDVADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIFPENHLMQRLFTPSLAQKYEELYQENGVKFIKGASIKNLEASSDG HVAAIKLENGSTIEADMVIIGIGAKPAVGPFERLGLNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMARVEHVDHARRSAQHCVKSLLTAHTSS YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQVGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALEIARTS LQAAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63940		MDAR6	monodehydroascorbate reductase...		Potri.001G099600 [exp]	0	1
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.001G059900 [exp]	6.63	0.6333	G6PD.2
AT2G32730			26S proteasome regulatory comp...		Potri.017G054400 [exp]	7.87	0.6594
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.007G137200 [exp]	9.84	0.6845
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	15.77	0.6401
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035700 [exp]	20.49	0.5636
AT4G16830			Hyaluronan / mRNA binding fami...		Potri.014G049300 [exp]	32.98	0.5698
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	34.85	0.6298	MYB222
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	38.10	0.5935
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.016G043800 [exp]	49.38	0.5986	EIF3.3
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	59.44	0.4982	SNF4.4

Compare expression of checked genes

Potri.001G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.