Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63930 418 / 5e-145 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 322 / 3e-108 Protein of unknown function (DUF793) (.1) AT4G23530 309 / 1e-102 Protein of unknown function (DUF793) (.1) AT1G18740 258 / 8e-83 Protein of unknown function (DUF793) (.1) AT1G74450 250 / 2e-79 Protein of unknown function (DUF793) (.1) AT1G43630 226 / 5e-70 Protein of unknown function (DUF793) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132100 [exp] 630 / 0 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1) Potri.005G192600 [exp] 278 / 2e-90 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1) Potri.002G067800 [exp] 259 / 4e-83 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028764 [exp] 452 / 2e-158 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1) Lus10029782 [exp] 280 / 4e-91 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1) Lus10042809 [exp] 274 / 8e-89 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 269 / 7e-87 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 266 / 9e-86 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10017519 [exp] 206 / 3e-65 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05633 [poplar] [flax] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Potri.001G099700.1 pacid=42787792 polypeptide=Potri.001G099700.1.p locus=Potri.001G099700 ID=Potri.001G099700.1.v4.1 annot-version=v4.1 ATGCCTGCTACAGAACACCAGCAATCATTTCTTGGCAGAATCAGCATTAGAAGAAACCAAGTAATTGCTATGGATGGTAACCATGAACAAGAACTAGAAG TCCTGGAGCTTTTTCAAAGACATACAGGCGATCGTTTTGCTGATTTACTATCGCATCCTGAAGATTATCCTTTCTCCGGTGAGCCATTTCTCTCAATTTC TTGGCTAAGAAAACTAGTTGATGTTTTGTTGTGCTGCGAGGCAGAATTCAAAGCTGTTTTAATTATGGGTCGTGACCCTTCTCAAATACTTAAACCGCCA TTGGATCGTTTACTTATTGATTTTATGGAACGTGCTGTTAAAGTTCTTGATATTTGTAATGCCGTTTCTAGCGGGGTTGATTCTATTCGTCAATGTCAAA AATTGGCTGAGATTGTTGTTTCTGCTTTAGAGCAGAAACCAATTGGTGATGGTCAAGTTAAGCGAGCTAGAAAGGCTCTCAGCGCTTTGATGTCTGCTTT GACAATTGATGATAAAGAAAATAATCATTCAAGGTATGCAGAGAGAACTTGGTCTTTTGGAAGGAGAGGAAGTAACAGTGGGGGTAATCATAAGGACCGA GCTACTCACGGTTCTTTTCGATCTTCATCAATGGTTTTGGCTAAAAACTGGTCTGCTGCAAAACAAATTCAGGCTATGTGTTCTAATTTGGCGGTACCAA GAGGTGGAGAATCAACGGGATTGGCTCAGCCTGTTTATATAATGAGTAATGTTATGGTTTTTGTGATGTGGGCTCTTGTGGCCGCAATTCCATGTCAAGA AAGGAGTGGATTGTCAACGCATTTTCAGATTCCAAAGCAATTTGTGTGGGCACATAGCATAATTGGGATGCAGGAGAAGATTGGAGAGGAATGGAAAAAG AAAGAGAAAAAAGGGTCAGCTGGATTGCTAGAGGAGATGCAAAGGATGGAGAAGCTGGGGCAGAGTTTGATTGAATTTGCTGATGGATTCCAATTTCCTG CGGAGGCTGAGAAGTTGGAGGAAGTGGCTGCGCGGGTGGCGGAGCTGGCGGAGATTTGCCAGAGAATGGAGGAAGGGTTGATGCCTTTACAGCAGCAGAT TAGAGAATTGTTTCATAGGATTGTAAGGAGCAGGACAGAGATTCTTGATTTGTTGGATAATGGGAAAGCTTCTCAACCTATAATATAA
AA sequence Show only first row Show all	>Potri.001G099700.1 pacid=42787792 polypeptide=Potri.001G099700.1.p locus=Potri.001G099700 ID=Potri.001G099700.1.v4.1 annot-version=v4.1 MPATEHQQSFLGRISIRRNQVIAMDGNHEQELEVLELFQRHTGDRFADLLSHPEDYPFSGEPFLSISWLRKLVDVLLCCEAEFKAVLIMGRDPSQILKPP LDRLLIDFMERAVKVLDICNAVSSGVDSIRQCQKLAEIVVSALEQKPIGDGQVKRARKALSALMSALTIDDKENNHSRYAERTWSFGRRGSNSGGNHKDR ATHGSFRSSSMVLAKNWSAAKQIQAMCSNLAVPRGGESTGLAQPVYIMSNVMVFVMWALVAAIPCQERSGLSTHFQIPKQFVWAHSIIGMQEKIGEEWKK KEKKGSAGLLEEMQRMEKLGQSLIEFADGFQFPAEAEKLEEVAARVAELAEICQRMEEGLMPLQQQIRELFHRIVRSRTEILDLLDNGKASQPII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Potri.014G089700 [exp]	3.46	0.7604
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	5.65	0.7218
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	6.00	0.7381
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	6.32	0.7383
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	7.74	0.6729
AT4G16400			unknown protein		Potri.006G017900 [exp]	14.49	0.7162
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	16.24	0.6624
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	20.37	0.7168
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.007G140400 [exp]	20.90	0.6810
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	21.02	0.6943

Compare expression of checked genes

Potri.001G099700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.