Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01370 657 / 0 ATMPK4 MAP kinase 4 (.1) AT1G01560 625 / 0 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 618 / 0 ATMPK5 MAP kinase 5 (.1) AT2G46070 600 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G07880 570 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT2G43790 537 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 524 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 498 / 3e-177 ATMPK10 MAP kinase 10 (.1) AT2G18170 414 / 2e-144 ATMPK7 MAP kinase 7 (.1) AT1G10210 410 / 1e-142 ATMPK1 mitogen-activated protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131800 [exp] 713 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 655 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 648 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 569 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 556 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 530 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 526 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.005G231100 [exp] 426 / 7e-149 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.007G020100 [exp] 418 / 5e-146 AT2G18170 654 / 0.0 MAP kinase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024668 [exp] 681 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 659 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 657 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 652 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 647 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10032295 [exp] 581 / 0 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 567 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 566 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 521 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 520 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G099900.2 pacid=42788226 polypeptide=Potri.001G099900.2.p locus=Potri.001G099900 ID=Potri.001G099900.2.v4.1 annot-version=v4.1 ATGGCTACCACTAGTACTACTAAAGAGTCTAACAGCTCTGGTTCAACATCAGAGGGAGGAGGAGCTGTTCATCGCAATGGAAGTGAAATTAAAGGACTTT TAACTCATGGAGGTCGTTATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCTAGCAAGTATGTCCCTCCTGTTAGACCTATTGGTCGTGGTGC TTATGGCATTGTTTGTGCTGCTGTGAATTCGGAAACACATGAGGAAGTTGCTATAAAGAAGATTGGTAATGCATTTGACAACATAATAGATGCCAAAAGA ACACTGAGAGAGATTAAGCTCCTATGCCACATGGATCATGAAAATGTTATTGCTATGAGGGACATAATACGGCCACCCAAAATGGAGGCCTTCAATGATG TCTACATTGTTTATGAATTAATGGACACTGATCTTCATCAGATTATTCGTTCCGAACAATCCCTGAATGATGATCACTGTCAGTACTTCTTGTATCAGCT ATTACGAGGATTGAAATATGTACACTCAGCCAATGTTCTGCATCGTGATCTTAAGCCCAGCAATTTGCTTCTCAACTCGAATTGTGACCTTAAAATTGGA GACTTTGGGTTGGCAAGGACAACGGCTGAAACAGATTTCATGACTGAGTATGTGGTTACTCGTTGGTACAGAGCACCGGAGTTGCTCCTTAATTGTTCAG AGTACACTGCCGCAATTGATATTTGGTCTGTTGGTTGCATACTTGGTGAGATTATGACCAGAGAACCTTTATTTCCAGGGAAAGATTATGTTCATCAGCT GAGGCTTATCACAGAGTTAATAGGTTCCCCTGACGATGCTAGCCTTGGCTTTCTGCGAAGTAATAATGCCCGAAGATATGTTAGACAGCTTCCGCAATAC AAAAAGAAAATTTTCTCAGCTACGTTTCCCAATATGTCTCCTGGAGCTGTTGATCTACTGGAGAAAATGCTTGTGTTTGATCCCAGTAATCGCATCACTG TTGATGAGGCCCTTTGTCACCAATATTTGTCATCTCTCCATGATATCAATGATGAGCCTGTCTGCCCCAGGCCTTTTCATTTTGATTTTGAGCAACCATC ATGTACCGAAGAGCACATAAAAGAGCTCATCTGGAGGGAATCGATGAAGTTCAATCCAAATCCATCATGTTAG
AA sequence Show only first row Show all	>Potri.001G099900.2 pacid=42788226 polypeptide=Potri.001G099900.2.p locus=Potri.001G099900 ID=Potri.001G099900.2.v4.1 annot-version=v4.1 MATTSTTKESNSSGSTSEGGGAVHRNGSEIKGLLTHGGRYVQYNVYGNLFEVSSKYVPPVRPIGRGAYGIVCAAVNSETHEEVAIKKIGNAFDNIIDAKR TLREIKLLCHMDHENVIAMRDIIRPPKMEAFNDVYIVYELMDTDLHQIIRSEQSLNDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNSNCDLKIG DFGLARTTAETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSNNARRYVRQLPQY KKKIFSATFPNMSPGAVDLLEKMLVFDPSNRITVDEALCHQYLSSLHDINDEPVCPRPFHFDFEQPSCTEEHIKELIWRESMKFNPNPSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.001G099900 [exp]	0	1
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Potri.013G083200 [exp]	27.71	0.7384
AT1G50510			indigoidine synthase A family ...		Potri.001G254000 [exp]	60.79	0.6869
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.019G092600 [exp]	61.18	0.7058
AT3G05510			Phospholipid/glycerol acyltran...		Potri.005G025400 [exp]	63.87	0.6930
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Potri.008G128900 [exp]	64.03	0.6605
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Potri.008G003400 [exp]	76.15	0.6946
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.001G026700 [exp]	81.66	0.6445
AT2G18630			Protein of unknown function (D...		Potri.005G127401 [exp]	103.15	0.6409
AT4G38980			unknown protein		Potri.009G124000 [exp]	117.83	0.6624
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.011G051300 [exp]	128.23	0.6650

Compare expression of checked genes

Potri.001G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.