Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25700 323 / 9e-111 BCH1, B1, CHY1, BETA-OHASE1 ,BETA-OHASE 1 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) AT5G52570 322 / 2e-110 BCH2, B2, CHY2, BETA-OHASE2 ,BETA-OHASE 2 BETA CAROTENOID HYDROXYLASE 2, beta-carotene hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G145700 [exp] 317 / 4e-108 AT4G25700 352 / 8e-122 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Potri.004G074000 [exp] 302 / 2e-102 AT4G25700 363 / 3e-126 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039278 [exp] 324 / 7e-111 AT4G25700 418 / 7e-148 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Lus10027515 [exp] 321 / 1e-109 AT4G25700 419 / 1e-148 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G100200.1 pacid=42788233 polypeptide=Potri.001G100200.1.p locus=Potri.001G100200 ID=Potri.001G100200.1.v4.1 annot-version=v4.1 ATGGCAAGTATTACTTCAATATCAATGACTCCAAGTTCTGTAACCCACCGTTCTCGCCAAAGTTTTCTCCTAGAATATAAACCCAGTTCATTAATAATAT CAACTCATTTCAAACCAAAGGGTTTTGAATACTGGAGAAATAACAGGAATTTGAATTCATGTTCGGTCGTGGAGAAGAGAGCAGAGGATTCTATTGAGGT CAAAGATGATGACAAAGTACCAGATCTAGATGATGTCAAAGCGGTTTCACGTGTGGAGGAGAGATTAGCAACAAAGAGATCAGAGAGATATACTTACCTT GTTGCTGCAGTCTTGTCTAGTGTTGGTATCACTGCAATGGCTGCCATGGCTGTGTATTACAGATTCTTATGGCAAATGGAGGGTGGAGAGGTTCCATTGC TGGAAATCTTCGGTACATTTGCTCTGTCCGTGGGAGCTGTGGTTGGAATGGAGTTTTGGGCAAGGTGGGCTCATAGGGCATTGTGGCATGCTTCGCTGTG GCATATGCACGAGTCTCATCATAGACCAAGGAACGGTCCCTTCGAACTCAACGACGTTTTCGCAGTAATAAATGCCGTTCCAGCGATTGCACTCTTTTCC TATGGTTTCTTCAACAAAGGCCTTCTTCCTGGACTTTGTTTCGGTGCGGGTCTTGGAATTACAGTGTTTGGGATGGCCTACATGTTTGTACACGACGGTC TTGTCCACCGTAGATTCCCAGTAGGGCCCGTTGCTAACGTTCCTTACCTCAGGAGAGTGGCTGCAGCTCACCAACTTCACCACGCAGACAAATTCGATGG GGTTCCTTATGGGCTGTTTTTGGGACCTTATGAACTAGAAGAGGTAGGAGGCTTAGACGAGTTGGAGAAGGAGGTTCAACGAAGGATTAAAGCATCAAGA TAG
AA sequence Show only first row Show all	>Potri.001G100200.1 pacid=42788233 polypeptide=Potri.001G100200.1.p locus=Potri.001G100200 ID=Potri.001G100200.1.v4.1 annot-version=v4.1 MASITSISMTPSSVTHRSRQSFLLEYKPSSLIISTHFKPKGFEYWRNNRNLNSCSVVEKRAEDSIEVKDDDKVPDLDDVKAVSRVEERLATKRSERYTYL VAAVLSSVGITAMAAMAVYYRFLWQMEGGEVPLLEIFGTFALSVGAVVGMEFWARWAHRALWHASLWHMHESHHRPRNGPFELNDVFAVINAVPAIALFS YGFFNKGLLPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPVANVPYLRRVAAAHQLHHADKFDGVPYGLFLGPYELEEVGGLDELEKEVQRRIKASR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.001G100200 [exp]	0	1
					Potri.008G061600 [exp]	1.41	0.9792
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	2.00	0.9768	Pt-ERD1.3
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	4.47	0.9669	Pt-ATNAC3.1
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	4.89	0.9731	Pt-ATNAC3.2,NAC036
AT2G46550			unknown protein		Potri.007G097400 [exp]	5.83	0.9437
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	6.32	0.9494
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	8.24	0.9719
					Potri.001G248708 [exp]	11.48	0.9656
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	15.19	0.9645	Pt-GAS1.1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	15.90	0.9370

Compare expression of checked genes

Potri.001G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.