Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) AT1G71480 112 / 6e-30 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131500 [exp] 489 / 3e-177 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.019G074800 [exp] 112 / 1e-29 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G100600 [exp] 99 / 4e-25 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.002G070800 [exp] 81 / 6e-18 AT5G41470 85 / 2e-19 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G013200 [exp] 79 / 4e-17 AT4G22370 114 / 6e-32 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024664 [exp] 253 / 1e-83 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10032294 [exp] 226 / 1e-73 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10041048 [exp] 112 / 9e-30 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10003793 [exp] 50 / 2e-07 AT4G22370 86 / 4e-22 unknown protein Lus10006176 [exp] 0 / 1 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G100500.1 pacid=42792020 polypeptide=Potri.001G100500.1.p locus=Potri.001G100500 ID=Potri.001G100500.1.v4.1 annot-version=v4.1 ATGGCAGCTACTGTCAATTTCTATGGCCAACTCCCGCGGCAGACCATCTGCCCCGAAGGAGTGGCTGGACTCACTTTTGGCTTCTCACCCTTCAAAGGGT CGTCTCAATCAATGCAGAACAAGATGAAGATAACATGTTTAAGAAAACGGGCAAGTAACAAATCATTCAACAAAAGATGGGCAAATATGGTTGTGTCAGC GGCAGATGATTTCGACTTCAAATTGGGTCCTTCTCCATCCCATATGATCAAGCAATTCTATACATGCATCAATGAGAAGAAGTTGAAGGAACTAGATGGC TATATTTCGGATGACTGTTTCTTTGAGGACTGTTCCTTCCTTCAACCAATGCAAGGGAAAAAGGAGGTTATGCATTTCTTTGGACAACTTACAGCAGGCA TGGGCCAGAATGTGAAGTTCATTCTTGAACATGTATGTGAAGATGATGAATTTACAGCAGGAGTGAATTGGCACCTAGAATGGAAAACGATACAGATACC CTTCACCAAAGGATGCAGCTTCTACGAATGTTCTCAAAAGGAGGACAGACTTGTTATTAAGAAAGCTCTGGTTGTGATAGAATCACCCATCAAACCAGGA GGCATAGTTCTGACTCTGTTAAAGAATGTGACCGCAATATTTGACGATTTCCCAAAAGCTGCAGAATGGTTACTAAAGAGTCCTCATGTCATAATGCAAT TCTGTTCAAAAATTTACAGCAGACTTTTGGCACCTTTTGTCAACCCACTTCTGGCGGGCTACATCAGAGCCTGGAATCTCATTGCAAGATTATTTGCTTT TGCACTAAACACAATAATCCATTTTCTAATGAAGTATTTTGGATAG
AA sequence Show only first row Show all	>Potri.001G100500.1 pacid=42792020 polypeptide=Potri.001G100500.1.p locus=Potri.001G100500 ID=Potri.001G100500.1.v4.1 annot-version=v4.1 MAATVNFYGQLPRQTICPEGVAGLTFGFSPFKGSSQSMQNKMKITCLRKRASNKSFNKRWANMVVSAADDFDFKLGPSPSHMIKQFYTCINEKKLKELDG YISDDCFFEDCSFLQPMQGKKEVMHFFGQLTAGMGQNVKFILEHVCEDDEFTAGVNWHLEWKTIQIPFTKGCSFYECSQKEDRLVIKKALVVIESPIKPG GIVLTLLKNVTAIFDDFPKAAEWLLKSPHVIMQFCSKIYSRLLAPFVNPLLAGYIRAWNLIARLFAFALNTIIHFLMKYFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41470			Nuclear transport factor 2 (NT...		Potri.001G100500 [exp]	0	1
AT5G18970			AWPM-19-like family protein (....		Potri.008G200300 [exp]	1.41	0.9930
AT3G50120			Plant protein of unknown funct...		Potri.001G071400 [exp]	2.44	0.9895
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.012G017800 [exp]	2.64	0.9842
AT1G47271			Cystathionine beta-synthase (C...		Potri.005G228300 [exp]	2.82	0.9828
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034300 [exp]	3.46	0.9897
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.011G135400 [exp]	4.47	0.9886
AT1G23530			unknown protein		Potri.010G041600 [exp]	4.47	0.9894
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.001G419200 [exp]	6.48	0.9862
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061300 [exp]	6.70	0.9785
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	8.48	0.9825

Compare expression of checked genes

Potri.001G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.