Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16480 397 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G13650 399 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 394 / 1e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74600 387 / 2e-121 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 377 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G25970 377 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 379 / 1e-118 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 379 / 1e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 379 / 1e-118 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 378 / 1e-118 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 456 / 5e-147 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 435 / 2e-139 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 407 / 7e-129 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 404 / 1e-128 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 407 / 3e-127 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 399 / 8e-126 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 397 / 1e-123 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 390 / 9e-123 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 393 / 3e-122 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 437 / 1e-139 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 436 / 6e-139 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 393 / 5e-125 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 390 / 2e-123 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 386 / 3e-119 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 375 / 3e-119 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 381 / 1e-117 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 372 / 1e-116 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 372 / 8e-116 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 369 / 2e-115 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G100600.1 pacid=42788208 polypeptide=Potri.001G100600.1.p locus=Potri.001G100600 ID=Potri.001G100600.1.v4.1 annot-version=v4.1 ATGAAGAAGCTAAGAGCCCTGGCACAAACTCTCTCCTTCTCTCAATTCGAAACCCTAATCTCCCAAAAAGGTTATCCTCAAGCTCTCAAATCCTCACTCA CTTTGTCATGTCCTCTCCTCACCGACCAAACCTACTCTCTCTTCATCAAATCAGGTCACTTTCTTGACCCCTACGTATCCACAGCTCTCATTTCTCACTT CTCCAAACTTCACAACAACAACAACAACAATCTCTCTCGCTCTCTTTCTTTCTTCTTAGACACACAAAACCCCGATATCATCACTTACAATGCAATCATT TCTGGGTTTGCAAGGGCTAATGATTCTAGAACTGTTTTGGGACTTTTCAATGAATTAAGGCATGCGGGTTTGGTGCCTGATGTGTTTACTTTGAGTTCTT TAATTAAAGGGTGTGTGAGTTTGAGAGAGAATTGGGTTTCTCAAGGGGTTTGTTTAAAACTTGGGTTTGGGTCTAAAAGCTTTGTGATTAGTGGGTTGAT TGACAATTATTCAAAGAATGGAGATTTGGGGTCAGCTGAGAGGTGTTTTAAGGAGTGTTTAGATTTGGATAATGTGGTCTGTACTGTTATGGTTAATGGG TATGTGTGGAATGAGGAGTTTGAGAAGGGAAAACAGGTTTTTGTTGAAATGAGAGGGTTAGGTTTCGAGTTAAATGCATTTAGCTTAACTGGTGTGGTCG GGGCTTTGTTTGATGTAAGAGAAGGGGAGCAAATTCATGGTTTTGGTGTAAAGATGGGATTTTTACGTGGTTCTTCAATGCATTTTAGCAATGCTGTTAT GAGTATGTACGCTAGGTGTGGAAGAGAGGTTGATGCTATTAAGGTGTTTGATGAAATTGCTGAACCAGATGTTGTTTCTTGGACTGAGAGAATAGGAACT GCTTCTGATGGTCATGAAGCTGTGGAATTGTTTAGAATTGTACTTTCCTTAGGTTTGGATGTGAATGGGTATACTTTAATTAATGTTTTGTCAATGATTG GAGGAGTGAAATTTTTGAATGCAGGGAAGCAGATTCAAGCACTTTGTCATAAGACAGGGTATTTCCAGGTGGTCTCTGTCGGCAATGCTTTGGTGTCCAT GTATGGGAAGTGTGGGCAAATCTGCGATGCTTGTAGAGTTTTTTATAACATGATTATACGAGATTCTGTTTCTTGGAATTCTCTGATCTCTGCATGTTCT GAGAATGGATTTGTTAATCAGGCTCTAGAGGTGTTCTATCAGATGCGTGAGTTGTCACTGCAACCTACTATACATACTCTGGCTAGCATTCTTGAAGCAG TGTCCAATTCAAACAATACAAAGCAGGTGATACAAATCCATTCACTTGTTGTTAAATGTGGATTCATGTTTGATGTTTCTATGATTTCTTGCTTGATAAC AGCGTATGGGAGATGCAACAGTATGGATGAATCCAAAAGGGTGTTTGCTGAGATTGATAAGGTAAACTTGGTTCATCTGAATACGATGATAACTACTTTT GTCCGTGCTGGTTATTATACTGATGCTTTGGCATTGTATCAAACCATATGGAGCTTGCACCGTAAAGTGGACAGTAGAACTTTCAGCATTATCCTTAAAG CTTGTAGTGCTATAACAGATATGCAACTGGGAAGAGCAGTTCATTCCCTAGTATTAAAAACTGGATTTGATCAGGATAGCTTTGTTGAAAGTTCTGTCAT CGACATTTATTGCAAGTGCGGAAGCATTGGACAAGCAGAGAAAGCATTCAGGAGTTCATCTATGAACAGTTTGGCTGCTTGGAATGCCATGATGATGGGA TACGCCCATCATGGTTGTTATCAAGAAGTTTTTGATCTCTTTAACAAGATGTCTCAATTTGGAATAGAACCTGATGAGATAACTTATCTTGGTGTTCTTA GTTCATGCTGCCATGGAGGGCTCGTGAAACAAGCACGCCACTACTTAGACTCTATGTTTGAACTTCATGGAATAATCCCACACTTAGAACATTATGCCTG CATGATTGATCTGCTTGGTCGAGTTGGGCTCCTGGAAGATGCAAAGAAAACCATAGATCACATGCCTATTCAACCTGATGTTCATATATGGCAAATTCTT CTATCTGCCTGCAATATCCATGGACATGTTGAGCTGGGAAGAGTTGCAGCAAGAAAACTTCTTGAAATTCATCCTGAAAACGAATCTGCTTATATTCTTC TATCAAATCTTTATGCTTCTGTTGGTATGTGGAATGCTGTTGGAAGATTAAGAAAAGAAATGAAAGAAAAAAATCTCCGCAAGGAACCTGGTTCTAGTTG GATTCAAGTAGGTAGAAAAAGTCATACCTTTTTTGTTAATGATACTTCACATCCTCAAAGTAAAGAAATATATGCGGAGTTAATAAGGCTGTATAAACAA GTGATAGTGTCCCTGGAACCGGAACAAGATGGTGCTTTTCTATGGATCAATGGACCATGA
AA sequence Show only first row Show all	>Potri.001G100600.1 pacid=42788208 polypeptide=Potri.001G100600.1.p locus=Potri.001G100600 ID=Potri.001G100600.1.v4.1 annot-version=v4.1 MKKLRALAQTLSFSQFETLISQKGYPQALKSSLTLSCPLLTDQTYSLFIKSGHFLDPYVSTALISHFSKLHNNNNNNLSRSLSFFLDTQNPDIITYNAII SGFARANDSRTVLGLFNELRHAGLVPDVFTLSSLIKGCVSLRENWVSQGVCLKLGFGSKSFVISGLIDNYSKNGDLGSAERCFKECLDLDNVVCTVMVNG YVWNEEFEKGKQVFVEMRGLGFELNAFSLTGVVGALFDVREGEQIHGFGVKMGFLRGSSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGT ASDGHEAVELFRIVLSLGLDVNGYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVGNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLISACS ENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTF VRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMG YAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKQARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQIL LSACNIHGHVELGRVAARKLLEIHPENESAYILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQVGRKSHTFFVNDTSHPQSKEIYAELIRLYKQ VIVSLEPEQDGAFLWINGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.001G100600 [exp]	0	1
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	2.23	0.9250
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	4.69	0.9091
AT5G66500			Tetratricopeptide repeat (TPR)...		Potri.007G022500 [exp]	5.47	0.8807
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	7.74	0.8954
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	8.30	0.8990
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	9.48	0.8838
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	10.39	0.8989
AT1G07590			Tetratricopeptide repeat (TPR)...		Potri.009G030900 [exp]	10.95	0.8457
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	13.19	0.8930
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	15.87	0.8906

Compare expression of checked genes

Potri.001G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.