Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 696 / 0 BTB/POZ domain-containing protein (.1) AT5G60050 388 / 2e-128 BTB/POZ domain-containing protein (.1) AT3G50780 353 / 2e-114 unknown protein AT2G13690 236 / 9e-70 PRLI-interacting factor, putative (.1) AT3G05675 93 / 9e-20 BTB/POZ domain-containing protein (.1.2) AT2G24692 41 / 0.0001 unknown protein AT4G10800 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131000 [exp] 995 / 0 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 382 / 4e-126 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 382 / 1e-125 AT3G50780 623 / 0.0 unknown protein Potri.007G032800 [exp] 375 / 8e-123 AT3G50780 654 / 0.0 unknown protein Potri.007G109300 [exp] 265 / 1e-80 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.005G058700 [exp] 265 / 2e-80 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 103 / 3e-23 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G086100 [exp] 78 / 6e-15 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.006G202900 [exp] 70 / 2e-12 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017511 [exp] 809 / 0 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 780 / 0 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 702 / 0 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 365 / 5e-119 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 360 / 1e-117 AT3G50780 602 / 0.0 unknown protein Lus10023336 [exp] 351 / 9e-114 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10016789 [exp] 272 / 8e-86 AT3G50780 408 / 1e-140 unknown protein Lus10033484 [exp] 222 / 6e-64 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 216 / 1e-61 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 98 / 4e-21 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G100900.1 pacid=42790237 polypeptide=Potri.001G100900.1.p locus=Potri.001G100900 ID=Potri.001G100900.1.v4.1 annot-version=v4.1 ATGGCCACTGCTGCCACAACAACCACGAAAGCTCAGCACATTAAAGTCCAAGCTCAGCCCATCAAGCCCAAACGCCGTAAATACCGTGAAACCACCATTT CCTCCTCTGCCTCCGCCACCACAAATAATAACTCTGGGTCTGCGTACTTGGCCCAAACCCGGAAACTTGACCCACCAACTATAGTCTCCCCAGATAACAC TTGGTGCTGTCCAGCTTCTAAACCTCTCCCACCTCCACCTCCTCCACCACCATCACCACCTCCGCAAAAAACCCGTTTGCCCATCAACCCGAGTCCTCAA CTCGATTCGGTTACAACTTTATCTTCAAAATTCAAGATCCAGTTGTCTCCAGGAAGTCTGTCACCAGTCATGGACTTTACAACAACAACAACAACACTGA CAAATGGCCACCACCACATTGCTTCTCCAAATGAACACCCCTCTTTCCCTTCTAGTTTTACTAAGTTTAACTCTGCACTCACTGCCGGTCTGCTAAACCC TATGTCACCTCCACCACCTGATCATAAACCCCGGTCAAGCCCGACCCTTTTTGAAATGATGGCTAGTGAACCCGAAATGCAACCCAGAACTATAACCCAG ATGCCCATTAACGCCAACAATGGAAATATCAGCTTCAGAAACACCCAGAGCAGTCAAATGTCGGTTCAAGATAGGCAAGCTTTAATCTTGCAACGTATAA CTGACATTTTAGGAAACAGGAGTCCTGGCAATCAGTTTAATGATTCGAATTCTAGTGATGTGAAGTTGACATTGAGTTCTAAAGATGGGATTAGCGTTTC AATGGATGTGCATAGGCAGATCTTGGTGGGTCATAGTCGGTTTTTTGCAGTGAAATTATCGGATAAGTGGTCTAATAAGCAACAAAGAATGTCGACTCCT TACGTCGTCGAGATTGCTGATTGTGATGATGTTGAAGTTTATATTGAGACGTTGAGGTTAATGTATTGTAAGGATCTGAGAAGGAAGCTTATGAAAGAGG ATGTGTCTAGAGTTCTTGGTATTTTAAAGGTTTCTGCAGCAATTGGTTTTGATGCTGGGGTTTTATCTTGTTTGGAGTACTTAGAGGCTGCTCCATGGGC TGAGGATGAAGAAGAGAAGGTGGCTTCGCTGTTGTCGGAGCTTCGCCTTGAAGGGGTTGGAGCAGGCGAAGTTTTGAAGAGGGTTTCTGTTGAAGTTACT CATGGAGCTGATGATAGTAGTGACAACGAAGAAGTGCTTCTCAAGCTTTTGCATGTAGTTCTGGAAGGCAAAGACGAGAAAGCGAGGCGTGAGATGAAAG GTTTAGTGTCAAAGATGCTTCGCGAGAATTCTTCTCAGAATGACCTTCGGAAAGAGTCATTGTACTCGGCATGCAATGGGTGTTTGCAATTGCTTCAAGA CCACTTTCTCCGTGCAGCCTCAGGGGATTTGAATGACGTTGGACAGATTGCACGACAAGCAGATAACTTGCATTGGATTTTGGATATTTTGATTGATAGA CAGATTGCTGAGGAATTTTTGAAAACATGGGCCTCTCAATCTGAATTATCTGGTGTACATTCTAAAATTCCAGCTGTTCATAGGTATGAGGTTAGTAGAG TTACAGCTAGGCTGTTTGTTGGGATCGGAAAGGGGCAGTTGTTGGCATCAAAGGAAGCAAGATGCTTGCTTCTACAGACATGGTTGGTGCCATTTTATGA TGATTTTGGTTGGATGAGGAGGACATCGAAAGGCCTTGATCGACATTTGATCGAGGATGGTCTGAGTAACACAATTTTAACTCTCCCGCTTGCATGGCAG CAGGATATTTTGCTTGCTTGGTTTGATCGGTTTCTGAATTCTGGTGAAGATTGTCCTAATATACAAAGGGGATTTGAGGTTTGGTGGAGGAGGGCATTTT GGAGACGTAGTGGTGAGCAGGAAAGGACACGGCCAATAAGAATTACCACTGCAACCATTGAGAACTCGTAA
AA sequence Show only first row Show all	>Potri.001G100900.1 pacid=42790237 polypeptide=Potri.001G100900.1.p locus=Potri.001G100900 ID=Potri.001G100900.1.v4.1 annot-version=v4.1 MATAATTTTKAQHIKVQAQPIKPKRRKYRETTISSSASATTNNNSGSAYLAQTRKLDPPTIVSPDNTWCCPASKPLPPPPPPPPSPPPQKTRLPINPSPQ LDSVTTLSSKFKIQLSPGSLSPVMDFTTTTTTLTNGHHHIASPNEHPSFPSSFTKFNSALTAGLLNPMSPPPPDHKPRSSPTLFEMMASEPEMQPRTITQ MPINANNGNISFRNTQSSQMSVQDRQALILQRITDILGNRSPGNQFNDSNSSDVKLTLSSKDGISVSMDVHRQILVGHSRFFAVKLSDKWSNKQQRMSTP YVVEIADCDDVEVYIETLRLMYCKDLRRKLMKEDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEGVGAGEVLKRVSVEVT HGADDSSDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRENSSQNDLRKESLYSACNGCLQLLQDHFLRAASGDLNDVGQIARQADNLHWILDILIDR QIAEEFLKTWASQSELSGVHSKIPAVHRYEVSRVTARLFVGIGKGQLLASKEARCLLLQTWLVPFYDDFGWMRRTSKGLDRHLIEDGLSNTILTLPLAWQ QDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWRRSGEQERTRPIRITTATIENS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	1.41	0.9011
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.012G128200 [exp]	1.73	0.8657
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	2.44	0.8863
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	3.46	0.8611
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	3.60	0.8157
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	3.87	0.8588
AT3G05020		ACP1	acyl carrier protein 1 (.1)		Potri.013G031300 [exp]	4.89	0.8562
AT2G35470			unknown protein		Potri.003G095500 [exp]	5.65	0.8356
AT1G10850			Leucine-rich repeat protein ki...		Potri.010G097200 [exp]	8.48	0.8175
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	9.32	0.7933

Compare expression of checked genes

Potri.001G100900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.