Plant FIBer expression Database

Pt-XPB1.2 (Potri.001G101300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-XPB1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41370 1266 / 0 XPB1, ATXPB1 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1, homolog of xeroderma pigmentosum complementation group B 1 (.1)
AT5G41360 1240 / 0 XPB2, ATXPB2 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 2, homolog of Xeroderma pigmentosum complementation group B 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032287
[exp]
1182 / 0 AT5G41370 1202 / 0.0 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1, homolog of xeroderma pigmentosum complementation group B 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00271 Helicase_C Helicase conserved C-terminal domain
CL0023 P-loop_NTPase PF04851 ResIII Type III restriction enzyme, res subunit
CL0023 PF13625 Helicase_C_3 Helicase conserved C-terminal domain
Representative CDS sequence
>Potri.001G101300.3 pacid=42793624 polypeptide=Potri.001G101300.3.p locus=Potri.001G101300 ID=Potri.001G101300.3.v4.1 annot-version=v4.1
ATGGGACACGGTGATAAAAGTGGTCGACCAAATAAGAAATTCAAATTCACAACAAAGGATGATTATAGAAGCTCAGTGGCTGAAGATGATGCTTTTTACC
CTGAAGAAGCTGGGGATGACTTTCGCGATGGCGAGACAGAAGGAAAAAAGAGGGATTTTAGCAAATTGGAATTGAAGCCCGATCACGCGAATCGCCCATT
ATGGGCTTGTGCAGATGGACGAATTTTCCTTGAGACTTTCTCTTCTTTGTATAAGCAAGCTTATGATTTTCTCATTGCCATTGCCGAGCCTGTTTGCAGG
CCCGAGTCAATGCACGAGTATAATTTGACTCCACATTCCTTGTATGCTGCGGTGTCGGTGGGTTTAGAGACTGAAACAATAATTTCAGTTTTGAATAAGT
TGTCGAAGACCAAGTTGCCGAAAGAGATGATTGATTTTATACATGGTTCTACCGCTAATTACGGTAAAGTAAAGCTCGTGCTTAAGAAGAATCGGTACTT
CATTGAATCCCCATTTACCGAGGTATTAAAGAAGTTGCTCAAGGATGAAGTTATAGCTAAAGCAAGGATTCAACCCGAGAGTTCACATGGAACTGAGGGA
TTTACAATTAGCAAAGCTGCGGGGGAAATTGGAACTAGTCATGATGGATTATTGAATGAAGCAGAATTGGCTGCTGCAGCAGAAGAAAAAGAAACTCACT
CATTTGAAGTTGACCCTTCACAGGTTGAAAATGTTAAGCAGCGGTGCTTGCCAAATGCTTTAAATTATCCAATGTTGGAGGAGTATGATTTCAGAAATGA
CACTGTCAATCCTGACCTGAATATGGAATTAAAGCCTCATGCACAACCACGACCATATCAAGAGAAAAGCCTCAGTAAAATGTTTGGAAATGGCAGAGCA
AGATCTGGCATTATTGTTCTTCCATGTGGAGCCGGAAAGTCTCTAGTTGGTGTTTCTGCAGCTTGTCGAATAAAGAAAAGTTGCCTCTGTTTAGCAACAA
ATGCTGTTTCTGTTGATCAATGGGCCTTTCAATTCTCGCTCTGGTCAGACATTTCACAGGATCAAATTTGTCGTTTTACATCTGACAGCAAAGAACGATT
CAAGGGAAATGCTGGGGTTGTGGTGACAACATATAACATGGTTGCTTTTGGTGGAAAACGATCAGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAAT
AGGGAGTGGGGACTTCTTCTAATGGATGAGGTCCATGTCGTTCCCGCTCATATGTTTCGTAAAGTTATCAGCATCACTAAATCTCATTGCAAACTTGGGC
TTACTGCAACACTTGTGAGAGAGGATGAAAGGATTACCGATCTGAACTTCCTTATTGGTCCTAAACTATATGAAGCAAACTGGTTGGATCTAGTCAAAGG
GGGTTTCATCGCAAATGTGCAGTGTGCTGAAGTATGGTGCCCAATGACGAAAGAGTTTTTCGCTGAGTATCTAAAGAAAGAAAATTCAAAGAAGAAGCAG
GCACTTTATGTGATGAATCCTAACAAATTCAGGGCATGCGAATTTCTTATAAGATTTCATGAAGAGCAGCGTCGTGATAAGATAATTGTGTTTGCTGATA
ATCTTTTTGCACTCACAGAGTATGCAATGAAACTTCACAAGCCTATGATCTATGGTGCAACCAGCCATGCTGAGAGGACAAAAATTCTCCATGCGTTCAA
AACTAGTAGTGAAGTAAATACCGTCTTCTTGTCTAAGGTTGGTGATAACTCGATAGATATTCCCGAGGCAAATGTGATAATCCAGATATCATCACATGCT
GGTTCAAGACGACAAGAAGCTCAACGATTGGGTCGTATTCTGAGAGCAAAGGGTAAACTTCAAGATAGAATGGCAGGAGGCAAAGAAGAGTATAATGCTT
TCTTCTATTCTCTTGTATCTACTGATACACAGGAGATGTACTATTCAACCAAAAGACAACAGTTTCTGATCGATCAAGGTTATAGCTTCAAGGTGATAAC
AAGCTTGCCTCCAGCTGATTCAGGAGCTGATTTGAGCTATAACAGTCTTGAGGATCAATTGGGACTTCTTGCGAAGGTTTTGAGTGCTGGAGATGATGCT
GTTGGTTTAGAACAGCTAGACGAGGATGCAGATGACATAGCTCTTCACAAAGCCCGTCGCTATATGGGATCCATGAGTGTCATGTCAGGTGCAAACGGGA
TGGTCTATATGGAATACAGTACTGGGCAGAAAGGTGGGAAGGGCCAGATAAAGGGTAAGCCCAAGGACCCAGCCAAGCGGCATTATTTGTTCAAAAGGCG
CTTTGGCTGA
AA sequence
>Potri.001G101300.3 pacid=42793624 polypeptide=Potri.001G101300.3.p locus=Potri.001G101300 ID=Potri.001G101300.3.v4.1 annot-version=v4.1
MGHGDKSGRPNKKFKFTTKDDYRSSVAEDDAFYPEEAGDDFRDGETEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCR
PESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHGSTANYGKVKLVLKKNRYFIESPFTEVLKKLLKDEVIAKARIQPESSHGTEG
FTISKAAGEIGTSHDGLLNEAELAAAAEEKETHSFEVDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRA
RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFSLWSDISQDQICRFTSDSKERFKGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN
REWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQ
ALYVMNPNKFRACEFLIRFHEEQRRDKIIVFADNLFALTEYAMKLHKPMIYGATSHAERTKILHAFKTSSEVNTVFLSKVGDNSIDIPEANVIIQISSHA
GSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADSGADLSYNSLEDQLGLLAKVLSAGDDA
VGLEQLDEDADDIALHKARRYMGSMSVMSGANGMVYMEYSTGQKGGKGQIKGKPKDPAKRHYLFKRRFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41370 XPB1, ATXPB1 ARABIDOPSIS HOMOLOG OF XERODER... Potri.001G101300
[exp]
0 1 Pt-XPB1.2
AT3G58560 DNAse I-like superfamily prote... Potri.016G061700
[exp]
3.74 0.7214
AT2G23140 RING/U-box superfamily protein... Potri.005G144700
[exp]
7.14 0.6776
Potri.009G163001
[exp]
39.45 0.6604
AT4G27470 ATRMA3 RING membrane-anchor 3 (.1) Potri.001G401600
[exp]
42.00 0.6690
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Potri.001G294000
[exp]
52.38 0.6554
AT1G11660 heat shock protein 70 (Hsp 70)... Potri.011G139100
[exp]
54.99 0.6530
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Potri.017G078800
[exp]
97.48 0.6205 GN.2
AT3G07100 AtSEC24A, SEC24... ENDOPLASMIC RETICULUM MORPHOLO... Potri.010G211100
[exp]
116.94 0.6169
AT4G32640 Sec23/Sec24 protein transport ... Potri.013G035800
[exp]
119.33 0.6307 CEF.2
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.004G177700
[exp]
136.47 0.6219

Potri.001G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.