Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23460 1486 / 0 Adaptin family protein (.1) AT4G11380 1454 / 0 Adaptin family protein (.1.2) AT5G11490 319 / 2e-95 adaptin family protein (.1.2) AT3G55480 126 / 2e-29 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G31490 56 / 2e-07 Coatomer, beta subunit (.1) AT4G31480 56 / 2e-07 Coatomer, beta subunit (.1.2) AT5G22780 53 / 1e-06 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 52 / 2e-06 ALPHA-ADR alpha-adaptin (.1.2.3) AT1G60070 52 / 3e-06 Adaptor protein complex AP-1, gamma subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130400 [exp] 1624 / 0 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 323 / 4e-97 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.010G202800 [exp] 125 / 6e-29 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.018G007400 [exp] 77 / 4e-14 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 76 / 9e-14 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.009G150300 [exp] 55 / 3e-07 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G189700 [exp] 53 / 8e-07 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.016G104700 [exp] 46 / 0.0001 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017508 [exp] 1527 / 0 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 1516 / 0 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 1515 / 0 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 1513 / 0 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 337 / 4e-98 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 217 / 1e-58 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10023408 [exp] 126 / 2e-29 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10040289 [exp] 125 / 4e-29 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10015105 [exp] 69 / 1e-11 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 69 / 2e-11 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0159 [poplar] [flax] E-set PF02883 [poplar] [flax] Alpha_adaptinC2 Adaptin C-terminal domain CL0545 [poplar] [flax] APCOP-app_sub PF09066 [poplar] [flax] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain
Representative CDS sequence Show only first row Show all	>Potri.001G101400.1 pacid=42792275 polypeptide=Potri.001G101400.1.p locus=Potri.001G101400 ID=Potri.001G101400.1.v4.1 annot-version=v4.1 ATGAGCGGTCACGATTCAAAGTATTTCTCGACGACCAAGAAGGGTGAAATCCCTGAGCTCAAAGAAGAGCTCAATTCTCAGTACAAGGATAAGAGAAAAG ATGCTGTTAAGAAGGTGATTGCTGCAATGACAGTTGGGAAGGATGTATCGTCACTGTTCACAGATGTAGTGAACTGTATGCAGACAGAAAATTTGGAGCT CAAGAAGCTGGTTTATTTATATCTTATAAATTATGCTAAAAGCCAGCCTGATTTGGCAATACTTGCAGTAAATACATTTGTGAAGGATTCACAAGATCCA AATCCCTTGATTCGAGCTTTGGCTGTGCGGACAATGGGGTGCATTCGTGTTGACAAAATCACAGAGTATCTATGTGATCCGCTTCAGAGGTGCCTTAAGG ATGATGATCCTTATGTTCGCAAGACAGCAGCCATTTGTGTAGCCAAACTTTATGACATAAATGCTGAGCTTGTTGAGGATAGGGGGTTTTTGGAATCTGT CAAGGATTTGATTTCTGACAACAATCCCATGGTTGTAGCCAATGCTGTGGCAGCTCTTACAGAAATTCAAGACAATAGTGTCAGGCCCGTCTTTGAGATT ACTAGTCACACGCTCTCAAAGCTGCTTACTGCTCTTAATGAGTGCACAGAGTGGGGCCAAGTTTTTATTTTGGATGCGCTATCCAGATACAAGGCACCTG ATGCTCGTGAAGCTGAAAATATAGTGGAACGAGTTACTCCAAGGCTACAACATGCTAATTGTGCAGTTGTACTTTCAGCTGTTAAGATGATCCTTCAACA AATGGAACTTATAACCAGCACTGATGTGGTTCGAAATCTTTGCAAGAAGATGGCTCCTCCTCTTGTTACGTTACTCTCTGCAGAGCCGGAGATTCAGTAT GTTGCTTTGCGTAACATCAACCTAATTGTACAAAGACGGCCTACGATCCTTGCCCATGAGATTAAGGTGTTTTTTTGCAAGTACAATGACCCAATTTATG TGAAGATGGAGAAGCTAGAAATCATGATAAAGCTTGCTTCAGACCGTAATATAGATCAGGTTCTACTGGAGTTCAAAGAGTATGCCACAGAAGTTGATGT AGATTTTGTTAGAAAGGCTGTTCGTGCCATTGGCCGTTGTGCGATCAAGTTAGAGAGAGCTGCCGAGCGATGTATCAGTGTTCTCCTAGAGTTAATCAAG ATTAAAGTAAACTATGTGGTTCAAGAGGCTATCATAGTTATTAAAGACATCTTTAGGAGATACCCCAACACTTATGAGTCAATCATTGCGACACTCTGTG AGAGCCTAGACACTCTAGATGAACCAGAAGCCAAGGCTTCAATGATCTGGATTATTGGTGAATATGCTGAAAGAATTGACAATGCTGATGAGCTCCTAGA GAGCTTCTTGGAGAGTTTCCCTGAAGAGCCTGCACAAGTCCAGTTGCAATTGCTGACTGCAACTGTCAAACTCTTCCTTAAGAAGCCAACTGAAGGCCCT CAACAGATGATTCAGGTTGTTTTGAATAATGCCACTGTGGAAACTGACAATCCTGATCTAAGGGATCGTGCATACATATATTGGCGTCTGCTATCAACTG ATCCTGAGGCTGCTAAAGATGTTGTGTTAGCTGAGAAACCTGTGATCAGTGACGATTCAAACCTACTCGATCCATCTCTTCTTGATGAGCTTCTTGCCAA CATTGCAACACTGTCGTCTGTGTATCACAAACCCCCAGAAACATTTGTAACCCGTGTGAAGACTACAGCTCAGAAAACTGAAGATGATGAATATGCTGAA GGGAGTGAAGCAGGGTATCCTGAATCATCTGCTCATCCTGCTGATGGTGCAACATCACCACCTACTAGTTCAAGTAATGTTGCATATGCCGGAGCAACGC AACCAGCTCCTGCACCGTCTTCAAGTCCACCTGCTGCTCCTGTGCCGGATTTGATGGGTGATCTGTTGGGCATGAATAATAGTTCCATTGTGCCTGTTGA CCAGCCCTCCACTCCTCCTGGCCCTCCTTTGCCTGTTCTAGTGCCAGCATCCACTGGTCAGGGTTTACAAATCAGTGCACAGCTTATAGGGCGGGATGGT CAGATATTTTACAGTTTATTGTTTGAGAACAACTCACAGATTCCCCTGGATGGATTCATGATCCAGTTTAACAAGAATTCGTTCGGTCTTGCAGCTGCTG GACCTCTGCAGGTTCCGCAATTGCAACCTGGGACATCAGCGGCAATTCTGCTGCCTATGGTTTTGTTTCAGAATATGTCTGCTGGTCCTCCAAGCTCACT CTTGCAAGTTGCTGTGAAAAATAATCAACAGCCTGTATGGTATTTCAATGACAAAATCTCATTGCATGTATTCTTCACCGAGGATGGGAGGATGGAACGT GGAAGCTTTCTTGAGTCATGGAGGTCCCTTCCTGATTCAAATGAGGTCTCAAGGGACTTGCCGGACATTACAGTGAATGGTGTAGAATCTACATTGGACC GGCTTGCTGCATCAAACATGTTCTTTATAGCAAAGCGAAAGCATTCAAACCAGGATGTGTTCTACTTCTCTACTAAAATCCCTAGAGGAGTTGCCTTCTT AATCGAACTCACGACAGTTGTTGGAACCCCTGGGGTCAAGTGTGCCATCAAGACTCCAAACCCCGAGATGGCACCGCTTTTCTTTGAAGCCATTGAGACT CTCCTCAAGAGTTAA
AA sequence Show only first row Show all	>Potri.001G101400.1 pacid=42792275 polypeptide=Potri.001G101400.1.p locus=Potri.001G101400 ID=Potri.001G101400.1.v4.1 annot-version=v4.1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESVKDLISDNNPMVVANAVAALTEIQDNSVRPVFEI TSHTLSKLLTALNECTEWGQVFILDALSRYKAPDAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP QQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNLLDPSLLDELLANIATLSSVYHKPPETFVTRVKTTAQKTEDDEYAE GSEAGYPESSAHPADGATSPPTSSSNVAYAGATQPAPAPSSSPPAAPVPDLMGDLLGMNNSSIVPVDQPSTPPGPPLPVLVPASTGQGLQISAQLIGRDG QIFYSLLFENNSQIPLDGFMIQFNKNSFGLAAAGPLQVPQLQPGTSAAILLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMER GSFLESWRSLPDSNEVSRDLPDITVNGVESTLDRLAASNMFFIAKRKHSNQDVFYFSTKIPRGVAFLIELTTVVGTPGVKCAIKTPNPEMAPLFFEAIET LLKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23460			Adaptin family protein (.1)		Potri.001G101400 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.006G273300 [exp]	4.89	0.9099
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	5.00	0.8860
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	6.48	0.9140
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	6.55	0.9186
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.017G092000 [exp]	6.70	0.9102
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	7.87	0.8835
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	8.66	0.8636
AT4G24550			Clathrin adaptor complexes med...		Potri.002G105100 [exp]	8.83	0.8809
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	9.27	0.9141	ACLB.2
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	9.59	0.9102	RPT4.1

Compare expression of checked genes

Potri.001G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.