Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75060 178 / 8e-56 unknown protein AT1G19330 174 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130100 [exp] 414 / 2e-149 AT1G75060 178 / 8e-56 unknown protein Potri.014G041200 [exp] 184 / 2e-58 AT1G75060 317 / 3e-110 unknown protein Potri.002G133500 [exp] 179 / 1e-56 AT1G75060 312 / 2e-108 unknown protein Potri.005G088101 [exp] 124 / 7e-37 AT1G19330 55 / 9e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017506 [exp] 298 / 3e-103 AT1G75060 178 / 6e-56 unknown protein Lus10028777 [exp] 292 / 9e-101 AT1G75060 179 / 2e-56 unknown protein Lus10032725 [exp] 160 / 3e-49 AT1G75060 286 / 1e-98 unknown protein Lus10018805 [exp] 160 / 7e-48 AT1G75060 288 / 5e-98 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13867 [poplar] [flax] SAP30_Sin3_bdg Sin3 binding region of histone deacetylase complex subunit SAP30
Representative CDS sequence Show only first row Show all	>Potri.001G101600.1 pacid=42789364 polypeptide=Potri.001G101600.1.p locus=Potri.001G101600 ID=Potri.001G101600.1.v4.1 annot-version=v4.1 ATGTTAGAGACTGAGCTGTGTTCTTCTAGGATTCTTTCACCTTTTAGAGAGGAGAGTGGTGATGAAGAGCTATCTGTGCTTCCTAGGCACACTAAAGTCG TTGTCACTGGAAATAATAGAACAAAATCAGTGCTGGTTGGTTTGCAAGGCGTAGTCAAGAAGGCTGTTGGTCTTGGGGGTTGGCATTGGCTGGTTTTGAA AAATGGATCTGAAGTTAAGCTTCAAAGGAATGCATTGAGCGTACTGGAACATCCTACAGGGAATGAAGTGGATGATGATAACGATTTTGATACCAGCAGT GGCTCTGACATTGGTGAACATGATTTCTACAGGGGCAGTGAGTTCCATAAAATTAGCAAGCCAAGGGTTCGACCAACCAGGCCATGGGTTCCATCTGCGC CTGTAAAGTCAACAAATCGGAACAGTTACAGAGATGTTCAATCTATTATTCACACACCCCTGCCGACGGTGAACTTAGCAAGACTAGGAACTGATTCACT GCGGAGATATTGCAAAGAATTCAAACTTCCGGGTGTGAACTCCGAGTCATCAAGGGAACGGATACTTAATGCTGCCCAAATTCATTTTCCATCACAGCGA CCATTGAACGAGGTGCAAGTGGTAGCGGAATTCACCCGTGTGGCAAAGAGACTGAAAGAGAAGGACGGCCCCTCTGATTGA
AA sequence Show only first row Show all	>Potri.001G101600.1 pacid=42789364 polypeptide=Potri.001G101600.1.p locus=Potri.001G101600 ID=Potri.001G101600.1.v4.1 annot-version=v4.1 MLETELCSSRILSPFREESGDEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGSEVKLQRNALSVLEHPTGNEVDDDNDFDTSS GSDIGEHDFYRGSEFHKISKPRVRPTRPWVPSAPVKSTNRNSYRDVQSIIHTPLPTVNLARLGTDSLRRYCKEFKLPGVNSESSRERILNAAQIHFPSQR PLNEVQVVAEFTRVAKRLKEKDGPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75060			unknown protein		Potri.001G101600 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Potri.016G010800 [exp]	5.09	0.7345
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	8.83	0.7829
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.014G148900 [exp]	9.89	0.7108
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.010G108500 [exp]	10.95	0.7297
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.002G114800 [exp]	12.32	0.7894
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	16.43	0.7618
AT5G45540			Protein of unknown function (D...		Potri.015G112012 [exp]	16.58	0.7803
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.017G063700 [exp]	17.14	0.7515
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	18.30	0.6979
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	19.20	0.7149

Compare expression of checked genes

Potri.001G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.