Plant FIBer expression Database

Potri.001G101975 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63770 1268 / 0 Peptidase M1 family protein (.1.2.3.4.5)
AT4G33090 106 / 2e-23 ATAPM1, APM1 aminopeptidase M1 (.1)
AT5G13520 63 / 5e-10 peptidase M1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G129500
[exp]
1429 / 0 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.001G102051
[exp]
746 / 0 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.001G102126
[exp]
239 / 1e-72 AT1G63770 482 / 2e-165 Peptidase M1 family protein (.1.2.3.4.5)
Potri.006G224500
[exp]
111 / 6e-25 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1)
Potri.017G039200
[exp]
98 / 1e-20 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1)
Potri.008G045900
[exp]
59 / 7e-09 AT5G13520 965 / 0.0 peptidase M1 family protein (.1)
Potri.010G215700
[exp]
54 / 3e-07 AT5G13520 926 / 0.0 peptidase M1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024641
[exp]
1315 / 0 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Lus10025002
[exp]
114 / 1e-25 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1)
Lus10025001
[exp]
109 / 3e-24 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1)
Lus10026448
[exp]
108 / 4e-24 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1)
Lus10040361
[exp]
49 / 9e-06 AT5G13520 729 / 0.0 peptidase M1 family protein (.1)
Lus10023479
[exp]
45 / 0.0002 AT5G13520 551 / 0.0 peptidase M1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF11940 DUF3458 Domain of unknown function (DUF3458) Ig-like fold
Representative CDS sequence
>Potri.001G101975.1 pacid=42788810 polypeptide=Potri.001G101975.1.p locus=Potri.001G101975 ID=Potri.001G101975.1.v4.1 annot-version=v4.1
ATGCATGTATATGACCTTATTGTGCATTCCTTGACATATTTTCAGAGAGATAAGCAAGACAGAAGGAGACTAATTTGTGCAGTCGCCACAGAACCATTAC
CCAAGCAAGTTGAAGAATCCAAAATGGACGCACCAAAAGAAATCTTTCTCAAGGATTACAAGTTGCCTGACTACTACTTTGATTCGGTGGATTTGACATT
TTTGCTGGGTGATGAGAAAACAATTGTTAGTTCGAAAATAACTGTTTTACCCAGAGTTGAAGGTTCTTCTTCTCCGCTAGTTTTGGATGGAGCAGACCTG
AAGCTGCTTTCAGTTAAAGTCAATGGTGAGGAACTGAAGAATGGAGATTATCATTTGGAATCACGCCATTTAACAATCCTATCACCACCTTCTGGTAAAT
TTACGTTGGAAATTGTTACTGAGATATATCCCCAGAAGAACACATCATTGGAGGGACTTTACAAGTCATCTGGGAATTTCTGCACTCAATGTGAAGCAGA
GGGTTTCCGCAAAATTACATATTATCAGGATCGCCCTGATATAATGGCAAAATACACTGTCCGGATTGAAGCTGATAAATCTTTGTACCCAGTATTGCTA
TCTAATGGAAATCTCTTGGAACAAGGAGACCTTGAGTCTGCTTCTCTGGTTCTGTTGCAGGGTGGTAAGCATTATGTTCTATGGGAGGATCCCTTCAAGA
AACCTTGCTATTTGTTTGCATTGGTTGCTGGACAGCTGGAGAGCAGAGATGACATGTTTGTTACCCGTTCTGGTCGAAATGTGTCACTAAGAATTTGGAC
CCCTGCACAAGATGTACCCAAGACAGCACATGCCATGTATTCACTTAAAGCAGCAATGAAATGGGATGAGGATGTTTTTGGTCTTGAATATGACCTAGAT
CTCTTTAACATTGTTGCTGTCCCTGATTTTGACATGGGAGCCATGGAGAACAAAAGTTTGAATATTTTCAATTCCAAGCTTGTTTTGGCATCCCCAGAAA
CTGCTTCAGATGCAGATTATGCTGCTATTCTTAGGGTTATTGGCCATGAGTATTTCCACAACTGGACAGGCAACAGGGTGACTTGTCGTGACTGGTTCCA
GCTCAGTTTAAAGGAAGGTCTAACTGTATTTCGTGATCAGGAGTTTTCATCTGATATGGGAAGCCGCACTGTGAAGAGGATCTCTGATGTTTCAAGGCTT
CGAATTTCTCAGTTCCCGCAGGATGCCGGTCCTATGGCTCATCCAGTGCAACCACATTCATATATCAAGATGGACAACTTCTACACAGTGACGGTGTATC
AAAAGGGAGCGGAAGCTGTCAGGATGTACAAAACCTTATTAGGGAGTCAAGGTTTCAGAAAGGGCATGGATCTTTATTTTAAAAGACATGATGGTCAAGC
TGTGACATGTGAAGATTTTTTTGCTGCCATGCGAGATGCAAATGATGCAGATTTCGCTAATTTCTTACAATGGTACTCCCAAGCTGGTACACCTCTGGTT
AAAGTTACTTCATCTTATGATGCTGAAGCTCATACTTTCACCTTAAAGTTCAGTCAAGAAGTACCACCAACGCCAGGGCAACCAGTTAAAGAACCCATGT
TCATTCCTGTGGTGTTAGGGCTGCTCGACACAAGTGGCAAGGACATGCCACTCTCGTCTGTGTATCATGATGGAGCATTGAAGTCTATTGCAAGTGGCAG
TCAACCAGCCTATAGTACAATTCTTAGAGTAACCAAGAAAGAGGAGGAATTTGTTTTCTCTGATATACTTGAGCGGCCAGTACCTTCTCTATTGCGGGGT
TTCAGCGCTCCAATCCGTCTTGAATCTGATCTCTCTGACAGTGATCTGTTTTTCCTCCTTGCTCATGATTCAGATGAATTCAACCGATGGGAGGCTGGAC
AAGTCTTGGCTAGAAAACTGATGCTCAGTTTAGTCTCTGATTTCCAACAAGGGAAACCATTGGTTCTGAACCCAAAGTTTGTGCAAGGGCTAAGAAGCGT
ACTTAGTGACTCGAACTTGGATAAGGAATTTATTGCAAAGGCAATAACACTACCAGGTGAAGGAGAAATAATGGACATGATGGAAGTTGCAGATCCTGAT
GCTGTTCATGCTGTTCAATCTTTCATCAGGAAGCAGCTTGCATCTGAACTGAAAGCAGAGTTTTTACGCACAGTCGAAAACAATAGGAGCTCAGAAGAGT
ATGTGTTTAACCATCCTAACATGGCTAGGCGTGCTCTAAAGAATATTGCCCTTGCATATCTTGCATCACTTGAAGACCAGGAGTTAACTGAGCTTGCATT
GCATGAGTACAAAACTGCCACAAATATGACCGATCAATTTGCAGCTTTGGACAGCCATAGCCCAAAATCCTGGGAAAACTTGTGA
AA sequence
>Potri.001G101975.1 pacid=42788810 polypeptide=Potri.001G101975.1.p locus=Potri.001G101975 ID=Potri.001G101975.1.v4.1 annot-version=v4.1
MHVYDLIVHSLTYFQRDKQDRRRLICAVATEPLPKQVEESKMDAPKEIFLKDYKLPDYYFDSVDLTFLLGDEKTIVSSKITVLPRVEGSSSPLVLDGADL
KLLSVKVNGEELKNGDYHLESRHLTILSPPSGKFTLEIVTEIYPQKNTSLEGLYKSSGNFCTQCEAEGFRKITYYQDRPDIMAKYTVRIEADKSLYPVLL
SNGNLLEQGDLESASLVLLQGGKHYVLWEDPFKKPCYLFALVAGQLESRDDMFVTRSGRNVSLRIWTPAQDVPKTAHAMYSLKAAMKWDEDVFGLEYDLD
LFNIVAVPDFDMGAMENKSLNIFNSKLVLASPETASDADYAAILRVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRISDVSRL
RISQFPQDAGPMAHPVQPHSYIKMDNFYTVTVYQKGAEAVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDADFANFLQWYSQAGTPLV
KVTSSYDAEAHTFTLKFSQEVPPTPGQPVKEPMFIPVVLGLLDTSGKDMPLSSVYHDGALKSIASGSQPAYSTILRVTKKEEEFVFSDILERPVPSLLRG
FSAPIRLESDLSDSDLFFLLAHDSDEFNRWEAGQVLARKLMLSLVSDFQQGKPLVLNPKFVQGLRSVLSDSNLDKEFIAKAITLPGEGEIMDMMEVADPD
AVHAVQSFIRKQLASELKAEFLRTVENNRSSEEYVFNHPNMARRALKNIALAYLASLEDQELTELALHEYKTATNMTDQFAALDSHSPKSWENL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G63770 Peptidase M1 family protein (.... Potri.001G101975
[exp]
0 1
AT1G63770 Peptidase M1 family protein (.... Potri.001G102051
[exp]
1.41 0.9492
AT5G05570 transducin family protein / WD... Potri.016G117700
[exp]
14.86 0.7726
AT2G35050 Protein kinase superfamily pro... Potri.003G110000
[exp]
14.96 0.7936
AT3G14200 Chaperone DnaJ-domain superfam... Potri.003G070600
[exp]
18.70 0.7501
AT1G12580 PEPKR1 phosphoenolpyruvate carboxylas... Potri.003G120800
[exp]
18.76 0.7699
AT3G14200 Chaperone DnaJ-domain superfam... Potri.001G164700
[exp]
19.26 0.8036
AT3G50930 BCS1 cytochrome BC1 synthesis (.1) Potri.002G032700
[exp]
21.09 0.8249
AT1G10240 FAR1_related FRS11 FAR1-related sequence 11 (.1) Potri.008G108800
[exp]
22.97 0.7410
Potri.001G284801
[exp]
26.64 0.7834
AT1G70100 unknown protein Potri.008G192800
[exp]
27.96 0.7407

Potri.001G101975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.