Plant FIBer expression Database

Potri.001G102051 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63770 693 / 0 Peptidase M1 family protein (.1.2.3.4.5)
AT4G33090 104 / 4e-24 ATAPM1, APM1 aminopeptidase M1 (.1)
AT5G13520 52 / 6e-07 peptidase M1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G101975
[exp]
746 / 0 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.003G129500
[exp]
731 / 0 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.006G224500
[exp]
107 / 3e-25 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1)
Potri.017G039200
[exp]
98 / 6e-22 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1)
Potri.008G045900
[exp]
59 / 3e-09 AT5G13520 965 / 0.0 peptidase M1 family protein (.1)
Potri.010G215700
[exp]
55 / 4e-08 AT5G13520 926 / 0.0 peptidase M1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024641
[exp]
679 / 0 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Lus10025002
[exp]
112 / 1e-26 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1)
Lus10025001
[exp]
105 / 2e-24 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1)
Lus10026448
[exp]
104 / 4e-24 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1)
Lus10040361
[exp]
52 / 5e-07 AT5G13520 729 / 0.0 peptidase M1 family protein (.1)
Lus10023479
[exp]
44 / 0.0001 AT5G13520 551 / 0.0 peptidase M1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF01433 Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence
>Potri.001G102051.1 pacid=42793136 polypeptide=Potri.001G102051.1.p locus=Potri.001G102051 ID=Potri.001G102051.1.v4.1 annot-version=v4.1
ATGGCAAAATACACTGTCCGGATTGAAGCTGATAAATCTTTGTACCCAGTATTGCTATCTAATGGAAATCTCTTGGAACAAGGAGACCTTGAGGGTGGTA
AGCATTATGTTCTATGGGAGGATCCCTTCAAGAAACCTTGCTATTTGTTTGCATTGGTTGCTGGACAGCTGGAGAGCAGAGATGACATGTTTGTTACCCG
TTCTGGTCGAAATGTGTCACTAAGAATTTGGACCCCTGCACAAGATGTACCCAAGACAGCACATGCCATGTATTCACTTAAAGCAGCAATGAAATGGGAT
GAGGATGTTTTTGGTCTTGAATATGACCTAGATCTCTTTAACATTGTTGCTGTCCCTGATTTTAACATGGGAGCCATGGAGAACAAAAGTTTGAATATTT
TCAATTCCAAGCTTGTTTTGGCATCCCCAGAAACTGCTTCAGATGCAGATTATGCTGCTATTCTTAGGGTTATTGGCCATGAGTATTTCCACAACTGGAC
AGGCAACAGGGTGACTTGTCGTGACTGGTTCCAGCTCAGTTTAAAGGAAGGTCTAACTGTATTTCGTGATCAGGAGTTTTCATCTGATATGGGAAGCCGC
ACTGTGAAGAGGATCTCTGATGTTTCAAAGCTTCGAATTTCTCAGTTCCCACAGGATGCCGGTCCTATGGCTCATCCAGTGCGACCACATTCATATATCA
AGATGGACAACTTCTACACAGTGACGGTGTATGAAAAGGGAGCGGAAGTTGTCAGGATGTACAAAACCTTATTAGGGAGTCAAGGTTTCAGAAAGGGCAT
GGATCTTTATTTTAAAAGACATGATGGTCAAGCTGTGACATGTGAAGATTTTTTTGCTGCCATGCGAGATGCAAATGATGCAGATTTCGCTAATTTCTTA
CAATGGTACTCCCAAGCTGGTACACCTCTGGTGAAAGTTACTTCATCTTATGATGCTGAAGCTCATACTTTCACCTTAAAGTTCAGTCAAGAAGTACCAC
CAACGCCAGGGCAACCAGTTAAAGAACCCATGTTCATTCCTGTGGTGTTAGGGCTGCTCGACACAAGTGGCAAGGACATGTCCACTCTCGTCTGTGTATC
ATGA
AA sequence
>Potri.001G102051.1 pacid=42793136 polypeptide=Potri.001G102051.1.p locus=Potri.001G102051 ID=Potri.001G102051.1.v4.1 annot-version=v4.1
MAKYTVRIEADKSLYPVLLSNGNLLEQGDLEGGKHYVLWEDPFKKPCYLFALVAGQLESRDDMFVTRSGRNVSLRIWTPAQDVPKTAHAMYSLKAAMKWD
EDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILRVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSR
TVKRISDVSKLRISQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDADFANFL
QWYSQAGTPLVKVTSSYDAEAHTFTLKFSQEVPPTPGQPVKEPMFIPVVLGLLDTSGKDMSTLVCVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G63770 Peptidase M1 family protein (.... Potri.001G102051
[exp]
0 1
AT1G63770 Peptidase M1 family protein (.... Potri.001G101975
[exp]
1.41 0.9492
Potri.001G284801
[exp]
10.95 0.8152
AT2G46800 ATMTP1, ZAT1, Z... ZINC TRANSPORTER OF ARABIDOPSI... Potri.014G106200
[exp]
12.32 0.7895 Pt-MTP1.1
AT1G65780 P-loop containing nucleoside t... Potri.004G077800
[exp]
17.97 0.7651
AT4G31930 Mitochondrial glycoprotein fam... Potri.006G261601
[exp]
18.97 0.7801
AT3G53810 Concanavalin A-like lectin pro... Potri.009G036300
[exp]
22.44 0.7615
AT3G01820 P-loop containing nucleoside t... Potri.015G093200
[exp]
27.12 0.7619
AT1G29370 Kinase-related protein of unkn... Potri.005G202851
[exp]
30.46 0.7727
AT5G13640 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL AC... Potri.001G171000
[exp]
32.98 0.7697 Pt-ATPDAT.2
AT1G70100 unknown protein Potri.008G192800
[exp]
33.98 0.7269

Potri.001G102051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.