Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) AT4G25620 191 / 2e-55 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 165 / 8e-47 unknown protein AT1G76660 134 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129400 [exp] 653 / 0 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1) Potri.012G144200 [exp] 320 / 2e-104 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001100 [exp] 138 / 9e-36 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 131 / 2e-33 AT1G76660 453 / 7e-158 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024642 [exp] 352 / 2e-117 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 340 / 5e-113 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 244 / 3e-73 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 231 / 9e-69 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10039253 [exp] 228 / 3e-68 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 220 / 2e-64 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10016050 [exp] 127 / 4e-32 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 127 / 3e-31 AT1G76660 420 / 1e-141 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G102200.1 pacid=42790178 polypeptide=Potri.001G102200.1.p locus=Potri.001G102200 ID=Potri.001G102200.1.v4.1 annot-version=v4.1 ATGAGAGGCTTCAATGGAGAGTCGAGAGCTGCAAACAATACTTTAGAGACCATAAACGCTGCTGCTACTGCGATCGCATCTGCTGAGAATCGTGTGCCTC AAGCTACGGTTCAGAAGAGAAGATGGGGGAGCTGCTGGAGTATATATTTGTGTTTTGGATATCAGAAACACAAAAAACAAATTGGTCATGCTGTCCTTTT TCCTGAACCATCAGCTCCTGGAAATGGTGCTCCTGCTTCTGAAAATCCAACCCAAGCACCGGTAGTCACACTTCCCTTCGCTGCACCTCCCTCCTCCCCT GCCTCTTTCTTTCAATCAGAACCTCCTTCTGTTACTCAATCACCAGCAGGTTTAGTGTCCCTCACCTCTATTTCTGCCAGCATGTACTCTCCCAGTGGAC CTGCCTCTATTTTTGCCATTGGTCCTTATGCCCATGAAACCCAGTTAGTCTCACCACCTGTGTTCTCAACTTTTACCACTGAACCATCAACTGCTCCTTT CACTCCTCCTCCTGAGTCTGTCCACTTGACTACACCTTCCTCGCCTGAGGTTCCTTTTGCTCAATTCCTTGACCCTAGCCTCCGAAATGGTGATACGGGT CTGAGATTCCCATTTGATTTTCAGTCATATCAGTTTCATCCTGGAAGCCCGGTCGGCCAGCTCATTTCACCTAGCTCTGGCATTTCAGGTTCAGGCACAT CATCTCCTTTCCCTGATGGCGAGTTTGCTGTTGGTGGTGCTCACTTTCCTGAGTTTCGAATAGGCGAACCGCCAAAGCTCTTGAACCTTGATAAGCTCTC CACATGTGAATGGGGATCGTATCAAGGTTCAGGGGCTTTGACTCCAGAATCTGTGAGGCGCGGATCGCCCAACTTTCTCCTGCATCGTCAGTTTTCTGAT GTTCCGTCACGCCCTCGTTCAGGCAATGGACACAAGAATGGTCAAGTTGTTAATCATAGAGTGTCTTTTGAGTTAACTGCTGAAGATGCCTCGAGATGTG TGGAAGAGAAGCCAGCATTTTCTATTAAAACTGTGCCAGAATATGTGGAAAATGGCACGCAAGCTAAAGAAGAAAAGAACTCTGGTGAATCGATACAAAG CTTTGAGTGTCGTGTTGGTGTAACATCTAATGACTCGCCAGAGATGGCTTCAACAGATGGAGAGGCGGCACCACAGCATCGAAAGCAACAGTCCATCACT CTTGGCTCTGTTAAAGAATTTAACTTTGACAATGCTGATGAAGGAGATTCACGCAAGCCTAGTAGTTCAAACTGGTGGGCCAATGGAAGTGTTATAGGGA AGGAGGGTGAGACCACCAAGAACTGGTCGTTCTTCCCTATGGTGCAGTCAGGTGTTAGCTAG
AA sequence Show only first row Show all	>Potri.001G102200.1 pacid=42790178 polypeptide=Potri.001G102200.1.p locus=Potri.001G102200 ID=Potri.001G102200.1.v4.1 annot-version=v4.1 MRGFNGESRAANNTLETINAAATAIASAENRVPQATVQKRRWGSCWSIYLCFGYQKHKKQIGHAVLFPEPSAPGNGAPASENPTQAPVVTLPFAAPPSSP ASFFQSEPPSVTQSPAGLVSLTSISASMYSPSGPASIFAIGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPESVHLTTPSSPEVPFAQFLDPSLRNGDTG LRFPFDFQSYQFHPGSPVGQLISPSSGISGSGTSSPFPDGEFAVGGAHFPEFRIGEPPKLLNLDKLSTCEWGSYQGSGALTPESVRRGSPNFLLHRQFSD VPSRPRSGNGHKNGQVVNHRVSFELTAEDASRCVEEKPAFSIKTVPEYVENGTQAKEEKNSGESIQSFECRVGVTSNDSPEMASTDGEAAPQHRKQQSIT LGSVKEFNFDNADEGDSRKPSSSNWWANGSVIGKEGETTKNWSFFPMVQSGVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52430			hydroxyproline-rich glycoprote...		Potri.001G102200 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	2.44	0.8210
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	2.44	0.7652	ADR1.1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355100 [exp]	3.60	0.7469
AT4G24290			MAC/Perforin domain-containing...		Potri.019G001000 [exp]	4.89	0.7714
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	5.00	0.7266
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	6.32	0.7633
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	6.32	0.7579
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.013G061200 [exp]	6.48	0.7641
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Potri.014G135900 [exp]	9.48	0.7795
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	10.24	0.7449

Compare expression of checked genes

Potri.001G102200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.