Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41330 568 / 0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT3G09030 201 / 3e-59 BTB/POZ domain-containing protein (.1) AT4G30940 83 / 7e-17 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G24240 77 / 5e-15 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129300 [exp] 842 / 0 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.016G112900 [exp] 196 / 4e-57 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.018G107600 [exp] 91 / 3e-19 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.006G185300 [exp] 85 / 2e-17 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024643 [exp] 669 / 0 AT5G41330 580 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10028780 [exp] 666 / 0 AT5G41330 544 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10032277 [exp] 664 / 0 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10017502 [exp] 650 / 0 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10004834 [exp] 105 / 5e-25 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10021855 [exp] 82 / 2e-16 AT2G24240 742 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10036274 [exp] 80 / 6e-16 AT2G24240 740 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10002501 [exp] 71 / 6e-13 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10038089 [exp] 51 / 3e-07 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF02214 [poplar] [flax] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.001G102300.1 pacid=42788595 polypeptide=Potri.001G102300.1.p locus=Potri.001G102300 ID=Potri.001G102300.1.v4.1 annot-version=v4.1 ATGGCTACCTTCACAACCACAACTGTTATGTCCTCTCAAAGCAACAACCTTAGTCTCCACAAACTCAAGATTAACCCAAAAACACAATCAAACATAGTCA CAATTAACGTTGGTGGGCGAATTTTTCAAACAACAGATCAAACCCTAGCTCAAGCAGGTCCGAAATCCCTCCTGTCCCAACTCTCCGAGCTGAATCAACT CGTTCCCCATTTCATCGACCGAGACCCTGATTTATTCTCTATTCTCTTATCCCTCTTGAGAACCGGAAATCTCCCCTCAAAGGCCAAGTCTTACGATCTC AAAGACTTGATTGAAGAGTCAAAGTTTTACAAGATTGAGTCTTTATTAGTCAATTCTCTCTCGAACCCGTCTCAATTTGATCCTTTTAACCTCCAAAAAA CCGTAATTTTACCCTTGAATAGCCGGGACACGGCGTCAGCGATTACCGCTACACCGCACGGTTCCTTGCATGTGTCTCATGGTAGCAAGATCACATCTTT TGATTGGTCATTGCAGAACAAGTCAACAGCTTTAACCCAATTCACTGCAATTGATTCCATGTTAGCGATTTCCCCAAACTTGGTTGCTGTTGGGGCCACT GATTTCTCGGGGTTGCAAATTCTTGATCTAGAGAAAAAGGGATTAGTTTTAGAGACATTGAATTGGGAAAATGTGACTAAATCAGGGTCAACAGTACAAG CAATTGGGTCATCTAATGATTTGTTGTTTACGAGTTTCGAATCAAGTAGGCGGAACTCGAATTCAATATTGGTTTATGATTTAAAGACTTTATCGCCAGT TACTGAGATTGGTCATTATGAAATATTTGGTGCTGATTTGGATTCTGCTATACCGGCCACGAAATTGAAGTGGGTAGAGAGTTATAATGTGGTAATGGCA TCGGGGTCTCATAGTGGACCGTCGGGTGTGTTAGGGAATGTGAAGTTTTGGGATATAAGGAGTGGATGTGTGGTTTGGGAGTTCAAGGAAAAGGTTGATT GCTTTTCAGATATTACTGTTTCAGATAATTTGTCATCAATATTTAAAGTTGGAGTGAATTCTGGGGAGGTATTTTATGCAGATTTGAGGAAGCTAGGGAG TGAGGGTATTGATTCGTGGGTTTGTTTAGGTGATGAGAGGAAGGTGGGGAATGTGAGGAAAGAGGGGGTTGGGTGTAAGATTGAGGCTCATGGGAATCAA GTGTTCTGTAGTAGAGGTGGTGATATTGAGCTTTGGTCTGAGGTGGTGATGGATTCGTCAAAGAAGAGAGAAGAGGGATTGCCGGAAAGGGTGTTTAGGA AGAATTTGATGGGTAGAGTGAAGGATATGGCAGGGCCAAGGGTAACTAATTTGGCTTTTGGAGGGGACAGAATGTTCGTGACGTGGAAGGATCAGCAGTC TGTTGAGGTTTGGCAAAGTTCTGTAATGGGATCTTGA
AA sequence Show only first row Show all	>Potri.001G102300.1 pacid=42788595 polypeptide=Potri.001G102300.1.p locus=Potri.001G102300 ID=Potri.001G102300.1.v4.1 annot-version=v4.1 MATFTTTTVMSSQSNNLSLHKLKINPKTQSNIVTINVGGRIFQTTDQTLAQAGPKSLLSQLSELNQLVPHFIDRDPDLFSILLSLLRTGNLPSKAKSYDL KDLIEESKFYKIESLLVNSLSNPSQFDPFNLQKTVILPLNSRDTASAITATPHGSLHVSHGSKITSFDWSLQNKSTALTQFTAIDSMLAISPNLVAVGAT DFSGLQILDLEKKGLVLETLNWENVTKSGSTVQAIGSSNDLLFTSFESSRRNSNSILVYDLKTLSPVTEIGHYEIFGADLDSAIPATKLKWVESYNVVMA SGSHSGPSGVLGNVKFWDIRSGCVVWEFKEKVDCFSDITVSDNLSSIFKVGVNSGEVFYADLRKLGSEGIDSWVCLGDERKVGNVRKEGVGCKIEAHGNQ VFCSRGGDIELWSEVVMDSSKKREEGLPERVFRKNLMGRVKDMAGPRVTNLAFGGDRMFVTWKDQQSVEVWQSSVMGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	1.00	0.9853	WRKY40.2
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	2.44	0.9796
AT5G04010			F-box family protein (.1)		Potri.006G044801 [exp]	4.47	0.9727
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.009G080600 [exp]	5.00	0.9715
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.007G044800 [exp]	5.29	0.9547
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	5.65	0.9643
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.002G191800 [exp]	6.63	0.9575
AT2G27310			F-box family protein (.1)		Potri.009G160700 [exp]	6.92	0.9567
AT3G29000			Calcium-binding EF-hand family...		Potri.008G087900 [exp]	7.74	0.9619
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045150 [exp]	9.48	0.9542

Compare expression of checked genes

Potri.001G102300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.