Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 361 / 1e-127 ATOSM34 osmotin 34 (.1) AT1G75050 193 / 3e-61 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 187 / 2e-59 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75030 186 / 2e-58 ATLP-3 thaumatin-like protein 3 (.1) AT1G77700 178 / 4e-54 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 175 / 9e-54 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 175 / 4e-53 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 168 / 2e-51 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 170 / 1e-50 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 168 / 1e-50 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107600 [exp] 442 / 7e-160 AT4G11650 356 / 1e-125 osmotin 34 (.1) Potri.001G107800 [exp] 296 / 3e-102 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.018G096063 [exp] 294 / 2e-101 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.001G107950 [exp] 293 / 5e-101 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.001G222100 [exp] 180 / 4e-56 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 178 / 2e-55 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G087100 [exp] 177 / 9e-55 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 175 / 2e-53 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G221800 [exp] 172 / 3e-53 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024511 [exp] 361 / 3e-127 AT4G11650 315 / 5e-109 osmotin 34 (.1) Lus10006302 [exp] 298 / 1e-102 AT4G11650 294 / 3e-101 osmotin 34 (.1) Lus10007034 [exp] 294 / 3e-101 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006690 [exp] 291 / 6e-100 AT4G11650 292 / 1e-100 osmotin 34 (.1) Lus10017170 [exp] 261 / 3e-88 AT4G11650 251 / 2e-84 osmotin 34 (.1) Lus10023897 [exp] 191 / 1e-60 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025629 [exp] 182 / 1e-55 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 172 / 3e-52 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 171 / 1e-51 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 169 / 1e-51 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G102400.1 pacid=42788948 polypeptide=Potri.001G102400.1.p locus=Potri.001G102400 ID=Potri.001G102400.1.v4.1 annot-version=v4.1 ATGAGCCACTTAACCAAATTTCTCACCTCCTCCCTCCTCTTTAGCCTTCTCATCATCTCTACTAATGCAGCCACCTTCGAAATCCGAAACAATTGCCCTT ACACTGTGTGGGCCGCAGCCTCACCTGGCGGTGGGCGCCGTCTAGACCGTGGCCAGACTTGGTATCTTAATGTGCCTGCTGGCACGTCCATGGCTCGTAT TTGGGGCAGGACAAATTGTAACTTTGATGGTAGTGGTAGGGGTCGTTGCCAAACTGGGGATTGCACCGGTGGCCTAGAGTGCAAGGGCTGGGGTGTCCCT CCCAACACTCTAGCAGAATATGCGTTAAATCAGTTTGGTAACTTAGATTTTTATGATATATCCCTTGTTGATGGATTTAATATCCCTATGGAATTTAGTC CAACATCAAGCGGTGGCTCAGGGAAGTGTCAGGCGCTTCTCTGCACAGCAGATATTAATGGGCAATGTCCTAATGAATTGAGGGCTCCTGGTGGGTGTAA TAACCCATGCACTGTGTTTAAAACTAACGAATATTGCTGCACTAATGGGCAGGGGAGCTGTGGCCCTACCTATTTCTCAAGGTTTTTTAAGGATAGGTGC CCTACTTCTTACAGCTATCCCCAGGATGACCCTTCGAGCACATTTACATGCCCTGGCGGGACCAACTATAGGGTTATCTTTTGCCCTCGGGGGTCTCCTC ATTTCCCCTTGGAGATGGTTGAAGAACAGCGTGCGGAGTAA
AA sequence Show only first row Show all	>Potri.001G102400.1 pacid=42788948 polypeptide=Potri.001G102400.1.p locus=Potri.001G102400 ID=Potri.001G102400.1.v4.1 annot-version=v4.1 MSHLTKFLTSSLLFSLLIISTNAATFEIRNNCPYTVWAAASPGGGRRLDRGQTWYLNVPAGTSMARIWGRTNCNFDGSGRGRCQTGDCTGGLECKGWGVP PNTLAEYALNQFGNLDFYDISLVDGFNIPMEFSPTSSGGSGKCQALLCTADINGQCPNELRAPGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRC PTSYSYPQDDPSSTFTCPGGTNYRVIFCPRGSPHFPLEMVEEQRAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G102400 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142150 [exp]	5.83	0.7913
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041600 [exp]	7.54	0.7773	Pt-PR4.1
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G066200 [exp]	9.48	0.7336
					Potri.015G131300 [exp]	12.24	0.7049
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141700 [exp]	15.65	0.7355	Pt-CHIA5.2
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	17.20	0.7158	CHIA5.3
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	18.49	0.7058
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.008G155100 [exp]	19.36	0.6773
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G007000 [exp]	19.59	0.6746
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107600 [exp]	23.66	0.6289	Pt-OLP.6

Compare expression of checked genes

Potri.001G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.