Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11655 106 / 1e-28 Uncharacterised protein family (UPF0497) (.1) AT5G62820 47 / 4e-06 Uncharacterised protein family (UPF0497) (.1) AT2G36330 44 / 2e-05 Uncharacterised protein family (UPF0497) (.1) AT5G40300 44 / 4e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075100 [exp] 45 / 1e-05 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 40 / 0.0004 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.010G207000 [exp] 39 / 0.0008 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.001G102600.1 pacid=42792796 polypeptide=Potri.001G102600.1.p locus=Potri.001G102600 ID=Potri.001G102600.1.v4.1 annot-version=v4.1 ATGAAGCAGGAAGGAGAGATGTTTGTTGTTGCTTGCAGACCCATGGCTGGTGTGTCGCCTGTATCAGCCAATTCTCAATCGCAACAACCATTCCCAACAC CTTCACCATTCTCTTTCTCAGATGCCCCTGCACGATTGAGCACTAGACCTCCCATTTACCTTTCCAATCTCATCCTTCGATTCTTGGCACTTGTGTTCTC CTTCGTCTCTGCACTTTCCCTGGCTGCTTCATCATCCAAGAAGGATAGCCCACGTCCTTCTAGCTTCGCTGACTACTCAGAATTGCTGTACTGCTTCATT GCATCTGTTTTGGTGTTCGTTTATTCTGCTTTCCAACTCTTCAAAGGTATTTGTGACATTGCACAAAGAGGCATCCTCATCTCAGACATGTTCTCGGACT ACATGAGCTTCATTCTTGATCAAGTGGCAGGCTATCTTCTGATCTCTTCTAGTTCGGTAGCAATACTGGCCATCCAACAGATTGATAAAACTGCATCGAT CTTGAAGGCGGTCATCATTTCCACAGTCGTGTCGTTTGTGACTTTCCTTGTCATTGTGATATGCACTCTGTTATCAGGCTACAGGCTATGCAAGAGAATC ATCTGGTGA
AA sequence Show only first row Show all	>Potri.001G102600.1 pacid=42792796 polypeptide=Potri.001G102600.1.p locus=Potri.001G102600 ID=Potri.001G102600.1.v4.1 annot-version=v4.1 MKQEGEMFVVACRPMAGVSPVSANSQSQQPFPTPSPFSFSDAPARLSTRPPIYLSNLILRFLALVFSFVSALSLAASSSKKDSPRPSSFADYSELLYCFI ASVLVFVYSAFQLFKGICDIAQRGILISDMFSDYMSFILDQVAGYLLISSSSVAILAIQQIDKTASILKAVIISTVVSFVTFLVIVICTLLSGYRLCKRI IW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11655			Uncharacterised protein family...		Potri.001G102600 [exp]	0	1
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	2.82	0.9318
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	3.16	0.9272	EDS1.2
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	3.16	0.9156
AT3G06270			Protein phosphatase 2C family ...		Potri.008G198700 [exp]	4.24	0.9215
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119066 [exp]	11.61	0.9033
AT1G32690			unknown protein		Potri.003G092700 [exp]	12.84	0.9270
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003800 [exp]	15.16	0.9231
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	15.87	0.8969
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.011G057100 [exp]	16.61	0.9075
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	18.54	0.8825

Compare expression of checked genes

Potri.001G102600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.