Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 447 / 3e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 421 / 3e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23430 418 / 8e-148 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 343 / 4e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 341 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 279 / 1e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 278 / 2e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 228 / 8e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G54190 113 / 2e-28 PORA protochlorophyllide oxidoreductase A (.1.2) AT4G27440 109 / 3e-27 PORB protochlorophyllide oxidoreductase B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 449 / 2e-160 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 422 / 2e-149 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 404 / 2e-142 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 392 / 2e-137 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 391 / 1e-136 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 348 / 4e-120 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 286 / 2e-95 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 283 / 1e-94 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 283 / 1e-94 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035481 [exp] 461 / 6e-165 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 458 / 1e-163 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 442 / 3e-157 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 437 / 3e-155 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 427 / 1e-151 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 422 / 3e-149 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 422 / 9e-149 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 420 / 1e-148 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032280 [exp] 424 / 2e-148 AT4G11410 461 / 5e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 418 / 6e-148 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.001G103000.1 pacid=42789680 polypeptide=Potri.001G103000.1.p locus=Potri.001G103000 ID=Potri.001G103000.1.v4.1 annot-version=v4.1 ATGTGGCTTTTTGGATGGAAAGGGCCGTCTGGGTTCTCAGCCTCTTCTACAGCAGAGGAAGTTACACAAGGGATTGATGGAACTGGTCTTACTGCCATTG TTACAGGAGCATCAAGTGGCATTGGTGCAGAGACAACGCGTGTCCTTGCACTGCGTGGTGTCCATGTAGTTATGGCAGTGCGGAATCTGGATGCTGGTAG GAATGGCAAAGAAGCAATGCTCAAGGAAATCCCCAAAGCTGAGATTGATGTCATGGAGTTAGACCTAAGCTCAATGGCATCAGTGAGGAATTTCGCATCT GAATATACGTCCTTGGGTCTTCCTTTGAACATTCTCATTAATAATGCAGGGGTTCTGTCATCTCCTTCCAAGCTTTCTCAAGATAACATTGAGCTGTTAT TTGCAACCAACCATATAGGTCATTTTCTGTTGACAAACCTTTTATTGGAGATCATGAAAAACACAGCACAAAAAAGCAAGCAAGAAGGAAGGATCATTAA TGTATCATCAGTAGGTCACCGAATAGTGACTCGTGAAGGGATTTGTTTCGATAAAATCTATAACGAGGCGAGTTGGTTTTCTTATGGACAATCAAAGCTT GCTAACATATTGCACGCCAGTGAGCTTGCAAGGCGGCTGAAGGAAGAAGGGGAAGAGATAACTGCTAATTCACTACATCCCGGAGCAATCCATACCAATC TTCTGCGTCACCAGGGTTTTGTTAATGCTATTTTCAGCTTGTTCGGTAAATACATGACAAAAAATGTTCAGCAGGGAGCAGCAACTACATGCTACATTGC ATTGCATCCACAAGTTAAAGGGATGAGTGGAAACTATTTTATGGACAGTAACATAGCAGAACCAAGCTCTCAGGCCAAAGATGCAGAATTGGCCAAAAAG CTCTGGGATTTCAGCTTGATCATCACTGACAAAAAATAG
AA sequence Show only first row Show all	>Potri.001G103000.1 pacid=42789680 polypeptide=Potri.001G103000.1.p locus=Potri.001G103000 ID=Potri.001G103000.1.v4.1 annot-version=v4.1 MWLFGWKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGAETTRVLALRGVHVVMAVRNLDAGRNGKEAMLKEIPKAEIDVMELDLSSMASVRNFAS EYTSLGLPLNILINNAGVLSSPSKLSQDNIELLFATNHIGHFLLTNLLLEIMKNTAQKSKQEGRIINVSSVGHRIVTREGICFDKIYNEASWFSYGQSKL ANILHASELARRLKEEGEEITANSLHPGAIHTNLLRHQGFVNAIFSLFGKYMTKNVQQGAATTCYIALHPQVKGMSGNYFMDSNIAEPSSQAKDAELAKK LWDFSLIITDKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11410			NAD(P)-binding Rossmann-fold s...		Potri.001G103000 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075900 [exp]	2.64	0.9985
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131300 [exp]	3.46	0.9985
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076000 [exp]	4.58	0.9984
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076100 [exp]	5.29	0.9983
AT1G59740			Major facilitator superfamily ...		Potri.005G001400 [exp]	10.95	0.9968
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196800 [exp]	12.64	0.9961
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.005G254300 [exp]	12.84	0.9955
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.011G006200 [exp]	13.74	0.9960
					Potri.007G145600 [exp]	14.49	0.9932
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G026600 [exp]	15.49	0.9954

Compare expression of checked genes

Potri.001G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.