Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63690 829 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 749 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G05820 458 / 8e-157 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT2G43070 444 / 2e-151 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT2G03120 95 / 4e-21 ATSPP signal peptide peptidase (.1) AT4G33410 94 / 1e-20 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128500 [exp] 992 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 806 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 790 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.002G232200 [exp] 473 / 2e-162 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 459 / 3e-157 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 99 / 3e-22 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 96 / 2e-21 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 95 / 5e-21 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.015G145600 [exp] 94 / 2e-20 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031104 [exp] 894 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 783 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 754 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 725 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 658 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 577 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 567 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 447 / 3e-152 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 366 / 5e-123 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 177 / 3e-51 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0130 [poplar] [flax] Peptidase_AD PF04258 [poplar] [flax] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Potri.001G103100.1 pacid=42791432 polypeptide=Potri.001G103100.1.p locus=Potri.001G103100 ID=Potri.001G103100.1.v4.1 annot-version=v4.1 ATGGATTTTAAAAAACTGTGCTCTATAATCACTATAACAGGTGTGATTTTACTGGTGTGTCACCCATCTTCAGTTACAGCAGGAGATATAGTCCATGATG ATAACTTAGCTCCCAAAAAGCCTGGCTGTGAAAATGACTTCGTTTTGGTAAAAGTTCAAACTTGGGTCGGTGGAGAAGAGGATGCTGAATTTGTAGGCGT GGGTGCTAGATTTGGCACTACCATTGTGTCAAAAGAGAAAAATGCAAACCAAATTCGCCTTACACTTTCAGACCCTCGAGATTGTTGTAGTGCACCTAAG CACAAGCTTGATAGAGATGTCATCATGGTTCACCGAGGTCACTGCAAGTTCACAACCAAAGCAAATAATGCTGAAGCTGCTGGTGCTTCAGCTGTGCTCA TTATAAATAACCAAAAAGAACTTTACAAGATGGTCTGTGAGCCAGATGAAACTGATCTAGATATACACATACCTGCTATTATACTCCCACAAGATGCCGG TGCAAGCTTGGAAAAAATGCTATTGACTAATACATCAGTGTCTGTGCAGCTTTACTCTCCAAAGCGACCATTAGTTGATGTCGCCGAAGTCTTTTTGTGG TTAATGGCTGTTGGTACCATCTTGTGCGCGTCTTATTGGTCCGCGTGGACTGCCAGAGAAGCAGCTGCCGAACAGGACAAGCTATTGAAGGATGCTGTGG ATGAAGTTCCAAATGACAAAGCTGTGGGTGTTAGTAGTGTTCTGGACATCAATACAGCATCAGCTGTCCTGTTTGTTGTCATTGCTTCATGCTTCCTGGT CATACTTTACGAACTCATGTCATATTGGTTCATTGAGCTTTTGGTGGTCCTGTTCTGCATAGGTGGTGTGGAGGGCTTGCAAACTTGCCTGGTTGCTTTA TTGTCAAGGTGGTTCAAGCATGCTGGAGAATCATACATAAAAGTACCATTCTTTGGAGCTCTCTCGTACCTAACGTTAGCTGTTTCTCCATTCTGCATAG CATTTGCAGCTGGTTGGGCTATGCATCGCAATCTCTCCTTTGCCTGGATAGGTCAAGATACACTTGGAATTGCACTGATAATCACTGTTCTGCAAATTGT CCATGTACCTAATCTCAAGGTGGGTACTGTTCTGCTCAGTTGTGCGTTCTTGTATGACATCTTTTGGGTGTTTGTTTCCAAGAAGTTGTTCCATGAAAGC GTCATGATTGTGGTGGCTCGTGGTGATAGAAGTGGAGAGGATGGTATCCCAATGCTGTTAAAGATTCCACGCTTGTTTGATCCTTGGGGTGGTTACAGCA TCATAGGGTTTGGCGACATCCTTTTACCTGGGTTGCTGATAGCATTTTCCCTCAGGTATGATTGGTCAGCAAATAAGAGCCTTTGTGCTGGGTACTTCCC ATGGGCAATGCTTGCTTACGGATTAGGTCTTCTCGTTACTTATGTGGCACTGAACTTGATGGATGGCCATGGGCAGCCAGCACTGCTATATATCGTCCCA TTCACCCTTGGAACTTTTCTTACGTTAGGGAAGAAAAGAGGGGATCTCAGAGTCTTATGGACACAAGGAGAACCAAAAAGACCATGCCCCCATGTCCTTC TCCAACGTAGTCAAGAAATGGACTAG
AA sequence Show only first row Show all	>Potri.001G103100.1 pacid=42791432 polypeptide=Potri.001G103100.1.p locus=Potri.001G103100 ID=Potri.001G103100.1.v4.1 annot-version=v4.1 MDFKKLCSIITITGVILLVCHPSSVTAGDIVHDDNLAPKKPGCENDFVLVKVQTWVGGEEDAEFVGVGARFGTTIVSKEKNANQIRLTLSDPRDCCSAPK HKLDRDVIMVHRGHCKFTTKANNAEAAGASAVLIINNQKELYKMVCEPDETDLDIHIPAIILPQDAGASLEKMLLTNTSVSVQLYSPKRPLVDVAEVFLW LMAVGTILCASYWSAWTAREAAAEQDKLLKDAVDEVPNDKAVGVSSVLDINTASAVLFVVIASCFLVILYELMSYWFIELLVVLFCIGGVEGLQTCLVAL LSRWFKHAGESYIKVPFFGALSYLTLAVSPFCIAFAAGWAMHRNLSFAWIGQDTLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHES VMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDILLPGLLIAFSLRYDWSANKSLCAGYFPWAMLAYGLGLLVTYVALNLMDGHGQPALLYIVP FTLGTFLTLGKKRGDLRVLWTQGEPKRPCPHVLLQRSQEMD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.001G103100 [exp]	0	1
					Potri.003G070000 [exp]	2.23	0.8886
AT1G61415			unknown protein		Potri.015G049800 [exp]	3.00	0.8844
AT3G45400			exostosin family protein (.1)		Potri.005G055000 [exp]	4.89	0.8816
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	5.00	0.8646
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.015G084600 [exp]	7.87	0.8438
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	8.83	0.8374
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Potri.014G077800 [exp]	9.79	0.8618
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	9.89	0.8465
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	10.67	0.9022
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	13.49	0.8807

Compare expression of checked genes

Potri.001G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.