Plant FIBer expression Database

Potri.001G103200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G128400
[exp]
817 / 0 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035486
[exp]
115 / 2e-27 ND /
Lus10002011
[exp]
100 / 3e-22 ND /
PFAM info
Representative CDS sequence
>Potri.001G103200.2 pacid=42788446 polypeptide=Potri.001G103200.2.p locus=Potri.001G103200 ID=Potri.001G103200.2.v4.1 annot-version=v4.1
ATGATGTCCCCCATTTCTAAAATGGCAGAGCAACTGAAACTGCAGCAATGCTGGGAGTTTAGGAGGAAAGACGATGACTCTGATTCTTCAAGCAATGATT
CAAAACCAAGTGGCGAACCAGCTCTAAAAAAACACAAACTGATCTCGAGCTTCATTTCAGTTGATAATGATGAAACTAGTGATGCTAGTAAATTGCACCA
GATTGGCAACTGTGATCCTGGTATTTCAGACCAAATGAAATCTGGGAAAGCTGAAAATGGCCGAAGAAGGAGGAGTAAAAAGAATGATTCAACTCCTAAT
GAAAAGAAGAAGGGCCCTCACAGAGAAGTCCGCCGTAAGAAGAGTAAACCTAGTACTGATGAACAAGCTGTATTTGATGATCTTAAGAAGTACATGAACT
TTTTATTACAGGATCTTAAAGTTTCAAGAGAGAATTTATTGAAGTGGATGAGGGAAGAAATGCAGAAATTGGTGGAAGAGGAGACTGTTTCTGAGCTGGA
AACAAGAGAAGGCAGCTTTAGAGGAGAGAAAGTTCAATTGCAGCTTCAAACCAGCTTTGAGGAGAATGCACAAGTTCAGCACCAAAACACTTTCGGGAAC
ATGCCAGCCCAGCATCAAAACAACATTCAGGGCTATGGCCAAGCGCAGCCCCATAATAAGTTTGCGGAGAATGTCCACAGGCAGAACCTTATCAACTTTC
AGGAGAACAGTACCGAAGTGCATCATCAGAAGAATTTTCAGGAGAACATTTTCCTGCAACATCGAAATGCCTTCAGTTTGTGCAAAGGATCTCAAGATTG
CAATGGTGGGTCTACAGAAGGGTTTGGCAAAGCCAATAAATCAACTGACTCTAGTAATTGCAGTCTAACATTGGATAGTCATATTAGCCGAGCAATTGTA
CCCATGACAACAACTGAGAAGGAAAGAGAAGAAAGAATGGCATTATCTGCCAAGATGAATTCTAAACCTAGTCCTTCAGATAAGAATGTGCAAGTGCAGA
AGCCAAAGAGTATTGTGTTGGGCATAAGAGCTCAATGCAATGGTGGATCTTTAGAGAGGTCTGCAAAAGGCAGAAAAATTACTGATTCTAATAATCACCA
TCAAGCACCTGAACATCAATCTGATTATGCCCAAGCGATTGGATCCATGACATCAGGCAAGAAGAACAAAGGAGAAAGGCTGGCATTAACTGTCGAGCCA
ATGTTTCCAACTGGCTCCTCCAATCAGGTAGCTTCTTCAATGTACTTAACACTGCCTACTGTGTTAACAAAGCCTCTTGAAGCAAACCATAGGTTTGATA
CATCTTCATTGAACTCTATTCAACCAAGATTTGCTGGGAATCAAATAGGCATGAGTTCAGAAAGATCGAATCTGATACTAGGTTCAAGCAGTCATCATGG
ATACTTTCAGGGCATGCAGCCAGACGAAAGAAGTAGAAGCTTTGCTCAAATGAGTTCCAGAGACGTCAGTTACTTCAACCAAAACAGCACCATGTCATCA
ATTGTTGGAAATGGACTCCCAGTTCCATTTCTTCAGGCTGCAAATAGTAGTTTTAACATCCCAACCCAAGTCAGCTTGGAAAATCTAGCTCGTGAAAGCA
GCACCCCAGGTCTGAACATGAATGGAGGAGCCGTCAGGCTTCCAGGGGGAAGCTACTCTTTCTCAGAACAGTTGATAGCCAACAACTTCCTCTTCCTCGA
CCATTCTAGTTACAAAGCTGATGGTAGACTAACGTCATACCAAGATGGTTATCAATTCCCAAAATAG
AA sequence
>Potri.001G103200.2 pacid=42788446 polypeptide=Potri.001G103200.2.p locus=Potri.001G103200 ID=Potri.001G103200.2.v4.1 annot-version=v4.1
MMSPISKMAEQLKLQQCWEFRRKDDDSDSSSNDSKPSGEPALKKHKLISSFISVDNDETSDASKLHQIGNCDPGISDQMKSGKAENGRRRRSKKNDSTPN
EKKKGPHREVRRKKSKPSTDEQAVFDDLKKYMNFLLQDLKVSRENLLKWMREEMQKLVEEETVSELETREGSFRGEKVQLQLQTSFEENAQVQHQNTFGN
MPAQHQNNIQGYGQAQPHNKFAENVHRQNLINFQENSTEVHHQKNFQENIFLQHRNAFSLCKGSQDCNGGSTEGFGKANKSTDSSNCSLTLDSHISRAIV
PMTTTEKEREERMALSAKMNSKPSPSDKNVQVQKPKSIVLGIRAQCNGGSLERSAKGRKITDSNNHHQAPEHQSDYAQAIGSMTSGKKNKGERLALTVEP
MFPTGSSNQVASSMYLTLPTVLTKPLEANHRFDTSSLNSIQPRFAGNQIGMSSERSNLILGSSSHHGYFQGMQPDERSRSFAQMSSRDVSYFNQNSTMSS
IVGNGLPVPFLQAANSSFNIPTQVSLENLARESSTPGLNMNGGAVRLPGGSYSFSEQLIANNFLFLDHSSYKADGRLTSYQDGYQFPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G103200
[exp]
0 1
AT1G55790 Domain of unknown function (DU... Potri.003G101200
[exp]
12.72 0.7500
AT5G05800 unknown protein Potri.005G153700
[exp]
14.83 0.8030
AT5G13990 ATEXO70C2 exocyst subunit exo70 family p... Potri.001G325600
[exp]
16.30 0.7640
AT1G15170 MATE efflux family protein (.1... Potri.008G126500
[exp]
17.32 0.7752
AT2G19070 SHT spermidine hydroxycinnamoyl tr... Potri.006G165200
[exp]
18.46 0.7422
AT1G02970 ATWEE1, WEE1 WEE1 kinase homolog (.1) Potri.014G132400
[exp]
24.73 0.7657
AT3G02850 SKOR STELAR K+ outward rectifier, S... Potri.012G043000
[exp]
27.12 0.7414 Pt-SKOR.2
AT2G33860 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRI... Potri.011G059101
[exp]
27.56 0.7824
Potri.007G067650
[exp]
32.83 0.7769
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Potri.014G079300
[exp]
32.86 0.6971

Potri.001G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.