Plant FIBer expression Database

Pt-PDE316.1 (Potri.001G103300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PDE316.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63680 1008 / 0 APG13, ATMURE, PDE316 PIGMENT DEFECTIVE EMBRYO 316, ALBINO OR PALE-GREEN 13, acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002010
[exp]
1040 / 0 AT1G63680 1003 / 0.0 PIGMENT DEFECTIVE EMBRYO 316, ALBINO OR PALE-GREEN 13, acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01225 Mur_ligase Mur ligase family, catalytic domain
CL0063 PF02875 Mur_ligase_C Mur ligase family, glutamate ligase domain
CL0063 PF08245 Mur_ligase_M Mur ligase middle domain
Representative CDS sequence
>Potri.001G103300.1 pacid=42788182 polypeptide=Potri.001G103300.1.p locus=Potri.001G103300 ID=Potri.001G103300.1.v4.1 annot-version=v4.1
ATGGCCTTCACATTCACTCTCCAATCGCACACATTTCTCTCTCAAAACCCAAACTTGCTCTCTCCAAAACCAACCTTCTTCAAACCCCGCAATTTATTTC
CTTCTCTCCCTAAAACCCCTTCATTTCTTTCTCTCCACGGCACAAAACACTCGCTATTTGCTATTGGCCCAGATGGAAAATTCTACCCAAACACAGCAGA
TAATGACCCACCTGAAGCACCAGAAGATACAGCACATGGAGTATCAAAATGGGAACAAGTTCATATCCAAGCTTCAAGAGCAAGAAAAGCTCAAGAAGAA
GACTTCAAAAAGAACCAATCAACGTTTCTCAAAGCCATTGCAGATACCGAGGTAAATCCCAATTCCTTAAATAGTGACGGTGATGATTTGTTTGGTGAGA
TTGATAAGGCTATCGTTATGGAAAGACAAGAACTTGTTAAACAAGGACTGTTAAAACCAAAAGACATTAAAGGAAGTAGTGATGTTATGGAAGGTGTTGA
AGAGTTAGAGCCTGAAGAGGTGGTGGACTTGGAGGAGATTGATGAACTAACAGGGTTGACTGTGATTGATACTGACAGTGATGAAGATGGTTCAAGTGGG
TTTGATGTGGGTGTGGGTGAAAAGAGTGGAAAAAGCAATGCTGGGGCGTCTTTGGATGAAAAGAGTTTTGATTTGGATTTTGATAGTATCGGGAAATTGA
AGGTGAATATTGTGGAACCAAAGTTTAGGATGAGTTTAGCTGAGCTTTTGGATGAAAGCAAAGTGGTGCCGGTTTCGGTTTTGGGGGATTTGGAGGTGGA
GATTACTGGTATACAGGATGATTCGAGAGTGGTGAGTGCTGGTGATTTGTTTGTTTGTCGTGTGGGGATGAAGACGGATGGACATTTGTATTTGAGCGAG
GCTGATAAGAGAGGTGCTGTTGCGGTTGTGGCTAGCAAGGAGGTTGATATTGAAGAGACTTTGGGGTGTAAGGCTTTGGTGATTGTGGAGGATACTAATG
CAGTTTTGCCTGCATTGGCTGCAGCATTTTATAAGTTCCCTTCAAAGAATATGGCTGTGATTGGGATAACTGGGACGAATGGGAAAACTACGACAGCGAA
TTTGGTTAAAGGGATGTATGAAGCAATGGGGTTGAGGACTGGAATGTTGAGTACGGTGGCATATTATATACACGGGGATAATAAACTGGAGGCACCTAAC
ACAATCCCAGGTGCCATTTTGGTTCAGAATTTGATGGCTAAGATGCTGCATAATGGAACTGAAGCTGTTGTGATGGAGGCTACTTCCCAGGGACTGGCTC
TAGGGAGGTGTGATGAGGTTGATTTTGATATTGCTGTTTTTACCAATTTGACGAGGGATCATTTAGATTTTCATGGGACAGAAGAGGAGTATAAGAATGC
AAAGGCTAAGTTGTTTGCTCGGATGGTGGATCCAGAAAGGCATAGGAAAGTAGTTAACGTTGATGACCCAAATGCACCTTTCTTTATTGCTCAAGGAAAC
CAAGAGGTGCCAGTTGTGACCTTTGCTATGGAAAATAAAAATGCAGATGTCCATCCCTTGAAGTATGAGCTCTCCCTCTTTGAGACACAAGTTTTGGTTA
ATACACCCCATGGTATTTTAGAGATTTCATCAGGATTGCTTGGGAAGCACAATATCTACAATATTCTTGCGGCTGTGGCAGTTGGGATTGCAGTTGGTGC
ACCATTGGAAGACATTGTTAGAGGGATTGAAGAGATAGATGCGGTACCTGGTAGGTGTGAGTTAATTGACGAGGAGCAGGCATTTGGGGTGATTGTGGAC
TATGCTCATACACCTGATGCCCTATCTAGACTACTTGATTCCGTAAGGGAGCTTAGGCCTAAAAGAATTATCACGGTTATTGGTTGTGGCGGAGAGAGAG
ACAGAGGCAAGAGACCAATAATGACAAAAATTGCAACAGATAAAAGTGACATGACAATTCTGACATCTGACAATCCAAGGGGTGAAGATCCATTGGACAT
ATTGGATGACATGTTGGCTGGCGTAGGATGGTCAATGCAGGAATATTTGAAACATGGGGAAAATGATTACTACCCTCCTCTTCCAAATGGCCATCGTCTG
TTTTTGCATGACATTAGACGAGTAGCTGTCCGTTGTGCTGTTGCCATGGGTGAAGAAGGCGATATGGTTGTTGTTGCTGGTAAAGGCCATGAAACATATC
AGATTGAAGGTGACAAAAAAGAATTCTTTGATGACCGGGAAGAGTGCAGGGAAGCATTGCAGTATGTTGACGAGCTTCACCAAGCTGGGATAGACACAAG
TGAATTCCCATGGCGGTTACCAGAAAGCCATTGA
AA sequence
>Potri.001G103300.1 pacid=42788182 polypeptide=Potri.001G103300.1.p locus=Potri.001G103300 ID=Potri.001G103300.1.v4.1 annot-version=v4.1
MAFTFTLQSHTFLSQNPNLLSPKPTFFKPRNLFPSLPKTPSFLSLHGTKHSLFAIGPDGKFYPNTADNDPPEAPEDTAHGVSKWEQVHIQASRARKAQEE
DFKKNQSTFLKAIADTEVNPNSLNSDGDDLFGEIDKAIVMERQELVKQGLLKPKDIKGSSDVMEGVEELEPEEVVDLEEIDELTGLTVIDTDSDEDGSSG
FDVGVGEKSGKSNAGASLDEKSFDLDFDSIGKLKVNIVEPKFRMSLAELLDESKVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSE
ADKRGAVAVVASKEVDIEETLGCKALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGKTTTANLVKGMYEAMGLRTGMLSTVAYYIHGDNKLEAPN
TIPGAILVQNLMAKMLHNGTEAVVMEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERHRKVVNVDDPNAPFFIAQGN
QEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVD
YAHTPDALSRLLDSVRELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTILTSDNPRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRL
FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
0 1 Pt-PDE316.1
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Potri.015G091700
[exp]
1.00 0.9768
AT1G23180 ARM repeat superfamily protein... Potri.008G131900
[exp]
4.58 0.9692
AT4G13650 Pentatricopeptide repeat (PPR)... Potri.018G067500
[exp]
4.89 0.9609
AT1G51100 unknown protein Potri.001G417350
[exp]
5.09 0.9530
AT3G52170 DNA binding (.1.2) Potri.010G231900
[exp]
5.09 0.9594
AT3G54090 FLN1 fructokinase-like 1 (.1) Potri.016G109600
[exp]
5.47 0.9705
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Potri.006G205000
[exp]
6.92 0.9654
AT3G14900 EMB3120 EMBRYO DEFECTIVE 3120, unknown... Potri.001G390600
[exp]
7.07 0.9531
AT1G15510 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS E... Potri.003G058700
[exp]
7.14 0.9573
AT5G15390 tRNA/rRNA methyltransferase (S... Potri.004G122300
[exp]
9.48 0.9623

Potri.001G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.