Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45900 87 / 2e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G63670 82 / 7e-16 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT3G53540 73 / 9e-13 unknown protein AT4G00440 72 / 9e-13 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT3G61380 71 / 2e-12 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G28760 58 / 3e-08 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 57 / 6e-08 Protein of unknown function (DUF3741) (.1) AT1G01695 47 / 4e-05 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160000 [exp] 228 / 2e-62 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 120 / 1e-27 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G253600 [exp] 76 / 8e-14 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 68 / 3e-11 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 66 / 1e-10 AT3G53540 234 / 1e-64 unknown protein Potri.014G194600 [exp] 62 / 2e-09 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 47 / 0.0001 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002008 [exp] 342 / 2e-104 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 338 / 4e-103 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 103 / 3e-22 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 98 / 6e-21 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10014776 [exp] 93 / 5e-19 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 84 / 3e-16 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10024434 [exp] 70 / 7e-12 AT3G53540 449 / 2e-144 unknown protein Lus10022843 [exp] 66 / 1e-10 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10025296 [exp] 66 / 1e-10 AT3G53540 456 / 7e-146 unknown protein Lus10011911 [exp] 62 / 2e-09 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.001G103400.3 pacid=42789675 polypeptide=Potri.001G103400.3.p locus=Potri.001G103400 ID=Potri.001G103400.3.v4.1 annot-version=v4.1 ATGTCTACTAGCACTTATTCTCATATCATGGAAAGGAGGTCACCGAAGAGCCCTTTGCCGAGGAGCCCTTTTCCGAAGAGCCCTATGCCACAGAGTCCTG AATTCTATGAAAAATACAAGTCTAAATGTGCATATGGCTTAATTAATATCTTTCATTTCCGCCAACGTCACTCAAAGAAGCTGATTTCTGATAAGGCAGT TTTGAAGAGACATGCTGTTGAAATGAAGAAAATTGCAGAGGAAGATATGCCCATCAAGCAGCAGATAAAGAAGACCACTGCAAAAGTGGAACATGTACAA TCTGATACTGAACTTGCTGGTGACTCATCAACAAGCCATAGAAAAGCAATCAAGGCTACTCGGAAACCTCTTCGTTTACCTATTTATGGTTGTTATGATG TAGCAACCATGGGGCATGCAAAATCTGTTCATGAAAATTCAGCGGATGATTCTTCAAAAAAGTTGGAATCTGCAGTGACCAAAGAATCACTCTCCAATCA AGTGCAACCTAGAAACGAAACCGATTGTAACTGTAGAAGTATCCAACATGGAAAGCATGGCCAATCTAAGGAGATCAATCTTCAGGTTCGCATGAATGAA GCTACTGAAGCTTTTATAAATCAGAAGTTGATTGATGGAAAACACCTCAGCACAGATGGGGCAGATGACCAGTCTAAACATTTCATGGATGCACTAGATA TACTGAATTCCAACAAGGACCTGTTCATAAAACTCCTACAAGACCCCAATTCTCTACTGGTGAAACATATTGAAGACTTGCGAGACTCTCAGGAAAAAGT GCAGCAGATTAAATCTTACCCTGAAGATAAATTGTCAGAACAACACAAAAATAATTCAAGGGAATGTGAAAGGACTGGCTGTACCCGAAACTTCAACTCC ATTGATAGATACCTGTCCAAGCGAACTGGTGATCCTCAACCCTCGGAGACAATAGTAGTTTTGAAGCCTGGCTCTGCAAGCTTGCAAAACTGTGCGGATG GAATCAGTCATGACTCTCCACCGGTTCATTATAGGTTAAAAAATGTGCAGCAGAGTGTTAAACCTTCATTTTTCCCCCTTGTCAAAATGAAAAGAAAGTT GATGCATGCTATGCGGATGAGCAGGAAAGAGCGGCAGTTGATGTTGACTGATGGTGCAGTGCAGAAGTCCAAATATATTTTCCAAGAGAGTGAAAAATGT GGTGGCGGAGGTGTGGATATTAATGAAAGAAACTCACCAGGTGAAACCTCTTGTTATTTAGGAAGAACAACCATGGATGTCAGGAGTGAAGACCAGATGG ACAAAGTGGAAATAATTGAATCTAGTGTTAGAGAGGAAGCTGCTACAGCCAGTGAAAAAGGTCATGAAAGCTCAAGATTTTCAAATCTCAGGCATTCCAA GGAAACTAACAATGACAAATATGTTGAGACAAGGGTACATCTATCTGACTTTTTAATGAATGAAAATGTGAATCTTTCGAGAAAGCAGAGACCAAAAACC AGGGATGGGATGAGCTCTCTTCCTGAAATTGAATTCTTTCCTATGGCCGGTCCTAGATGTAAAGCGGAGCATGCCCGTGTCACTCCACAAATGAGATTTT CTCCCTATACCAGTTATCAAATGGTGAACAAGAACAAGTGGAATCAGAGTGAAAAGAGAAACAACACAAGTCCAACCCGGCAGACTTTGGAGGCTCCACC ATGGGCCAATGACAAAAAATGTGAGGATCAATTACAAATCATCGAGACAGAGAAAACTATTTCAGACAAACTTTTCCCTGATGTCAAAGAGGATGAAAAC ATCTCTTCTCTTGAAAATGATTCTAGCCCTGGAGTTTCCATCAAAATAATAGGAAAAAAGGACAGTAAAATTTCAGAAGAATATAGTCCCTCCGGCGTGC CCTCCAGACTAGATGGCTCGTACAATAGCGATGCTAATGAAAGCACCCGTACTGCAAATACAACTGACGAACATGAATCCTCAAAATTCTGTAGACTGGA TTCATCTGCAGATAATCAAATGTCACCATCTTCAACAAGTGATTATTTGTCAAGCCCTTCAACCATCCAGAGGGTTGAAGACTTGGACAAGGCCAAAGAG AGAGCAGAGCAGCCAAGTCCAGTATCTGTTCTTGAGCATTTTTTCATGGAAGATATGATTACTAGACCTTCAAGCCACGCATCACGGCCTGCTGAACTAT CAGCCCTGCCACTAAGAATAGGTAAAGAGGAAGACTATTTGGCTGCTCTTGTTCACTCCCCTTTGGATCTGAAGATTAATTCAAGCACTTCTTTGGAAGA GCTAGGATCCGTGTTGGAGTATATAGGTGCATTTTTGAGAGCTTCTGGCTTTAATTTGGATGATCTCTCATCAAAGTGCCATGGTGAGTCCTGTGGTGGT CATAAGCTCGTTTGTGATTATTTTGTCGAAGTCCTTCTAGAGGTATACCTGAACTACATGAGAAGCTCCCCTTGGTTGTCATTTGTCGAACCAAAAGTTC GACCTGTTACAATGGCAGAAAACATGGCTCAACAAGTGATGAAACATGTTGAACGGAACATACTCTTACAGCCACCTTCGCGAACATTAGATCATCTTGT TGAAAAGGACTTGACTAGCTCTGTGACATGGTTGGATGTCCGGATTGATGCTGAATATGTTGTTAGTATGATAGTAGAAAGTGTTCTAGAAGAAGTGATA ATGGAGACTGCAATTGAGTAG
AA sequence Show only first row Show all	>Potri.001G103400.3 pacid=42789675 polypeptide=Potri.001G103400.3.p locus=Potri.001G103400 ID=Potri.001G103400.3.v4.1 annot-version=v4.1 MSTSTYSHIMERRSPKSPLPRSPFPKSPMPQSPEFYEKYKSKCAYGLINIFHFRQRHSKKLISDKAVLKRHAVEMKKIAEEDMPIKQQIKKTTAKVEHVQ SDTELAGDSSTSHRKAIKATRKPLRLPIYGCYDVATMGHAKSVHENSADDSSKKLESAVTKESLSNQVQPRNETDCNCRSIQHGKHGQSKEINLQVRMNE ATEAFINQKLIDGKHLSTDGADDQSKHFMDALDILNSNKDLFIKLLQDPNSLLVKHIEDLRDSQEKVQQIKSYPEDKLSEQHKNNSRECERTGCTRNFNS IDRYLSKRTGDPQPSETIVVLKPGSASLQNCADGISHDSPPVHYRLKNVQQSVKPSFFPLVKMKRKLMHAMRMSRKERQLMLTDGAVQKSKYIFQESEKC GGGGVDINERNSPGETSCYLGRTTMDVRSEDQMDKVEIIESSVREEAATASEKGHESSRFSNLRHSKETNNDKYVETRVHLSDFLMNENVNLSRKQRPKT RDGMSSLPEIEFFPMAGPRCKAEHARVTPQMRFSPYTSYQMVNKNKWNQSEKRNNTSPTRQTLEAPPWANDKKCEDQLQIIETEKTISDKLFPDVKEDEN ISSLENDSSPGVSIKIIGKKDSKISEEYSPSGVPSRLDGSYNSDANESTRTANTTDEHESSKFCRLDSSADNQMSPSSTSDYLSSPSTIQRVEDLDKAKE RAEQPSPVSVLEHFFMEDMITRPSSHASRPAELSALPLRIGKEEDYLAALVHSPLDLKINSSTSLEELGSVLEYIGAFLRASGFNLDDLSSKCHGESCGG HKLVCDYFVEVLLEVYLNYMRSSPWLSFVEPKVRPVTMAENMAQQVMKHVERNILLQPPSRTLDHLVEKDLTSSVTWLDVRIDAEYVVSMIVESVLEEVI METAIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	0	1
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	1.41	0.9744
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	3.46	0.9579
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.007G065400 [exp]	3.74	0.9668	Pt-NAC1.1
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.016G124700 [exp]	4.58	0.9418	Pt-SOF.3
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134425 [exp]	6.48	0.9556
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033600 [exp]	7.21	0.9566
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	7.74	0.9493
					Potri.004G187300 [exp]	8.94	0.9530
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	9.48	0.9507	PtrProT5
AT3G03270			Adenine nucleotide alpha hydro...		Potri.004G075375 [exp]	9.94	0.9500

Compare expression of checked genes

Potri.001G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.