Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23330 174 / 9e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127900 [exp] 142 / 3e-44 AT4G23330 57 / 4e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024630 [exp] 133 / 2e-40 AT4G23330 136 / 8e-42 unknown protein Lus10032266 [exp] 127 / 2e-38 AT4G23330 115 / 5e-34 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10157 [poplar] [flax] BORCS6 BLOC-1-related complex sub-unit 6
Representative CDS sequence Show only first row Show all	>Potri.001G103800.1 pacid=42793610 polypeptide=Potri.001G103800.1.p locus=Potri.001G103800 ID=Potri.001G103800.1.v4.1 annot-version=v4.1 ATGGAAGAAGCGGCAGCAACTCAGAGAGATCAATCAACGGATACAGAATCAGTAATCATACAACCAGACCTGGATCTACCGGCCATGTGTCCCGATGAAC CCGACCGCCGTGAACCGAAAACCAATTTGAACCAGGGCGAGATCTTCAAGGCACTAGAAATCATCGAGAGAGACTCTCTAGCCATCGCCGGTAGCTTCAC TTCTCTTTTCGCTTCACTTCGTTTCGCTCTCTCTGAGGCTACGAGTACATCTGTTGATCATATGCAATGTTTTGGTGATGCTACTGCTCGTCTTCAAGAA TCTGTGCTTGATGCAGCAACGAAGGGAAATCGGTACATAAATTCGTGTATGAGATTGAACGAGGAAATGAAGGGCATTGACACTCTAGCGACTCAACTAA AAAACCTGAGGAGAAATGTCGACGTGCTGGACTCGGCTGTGACCAAACTCCTCCGCTTTCCATGA
AA sequence Show only first row Show all	>Potri.001G103800.1 pacid=42793610 polypeptide=Potri.001G103800.1.p locus=Potri.001G103800 ID=Potri.001G103800.1.v4.1 annot-version=v4.1 MEEAAATQRDQSTDTESVIIQPDLDLPAMCPDEPDRREPKTNLNQGEIFKALEIIERDSLAIAGSFTSLFASLRFALSEATSTSVDHMQCFGDATARLQE SVLDAATKGNRYINSCMRLNEEMKGIDTLATQLKNLRRNVDVLDSAVTKLLRFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23330			unknown protein		Potri.001G103800 [exp]	0	1
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Potri.006G196566 [exp]	9.16	0.8511
AT3G52860			unknown protein		Potri.014G127900 [exp]	12.12	0.7727
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032800 [exp]	15.81	0.8455	GBP.2
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G081600 [exp]	15.87	0.7966
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Potri.001G186000 [exp]	19.67	0.8221	Pt-TED3.2
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	20.49	0.8217
AT4G15790			unknown protein		Potri.010G024600 [exp]	24.49	0.8086
AT5G66150			Glycosyl hydrolase family 38 p...		Potri.007G056300 [exp]	26.26	0.7530
AT1G53820			RING/U-box superfamily protein...		Potri.001G162000 [exp]	27.49	0.8112	Pt-ATL3.2
AT1G03180			unknown protein		Potri.005G208700 [exp]	31.54	0.8173

Compare expression of checked genes

Potri.001G103800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.