Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) AT2G40830 81 / 3e-18 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 80 / 1e-17 RING/U-box superfamily protein (.1.2.3) AT3G10815 77 / 2e-17 RING/U-box superfamily protein (.1) AT3G46620 79 / 6e-17 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G56340 78 / 7e-17 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 77 / 2e-16 RING/U-box superfamily protein (.1) AT5G59550 77 / 2e-16 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G19950 75 / 8e-16 RING/U-box superfamily protein (.1) AT3G13430 74 / 1e-15 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062400 [exp] 93 / 5e-23 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.007G118000 [exp] 92 / 1e-22 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 91 / 2e-22 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.016G029300 [exp] 87 / 2e-20 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 87 / 3e-20 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.012G036700 [exp] 82 / 3e-18 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 78 / 2e-17 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 79 / 4e-17 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 79 / 6e-17 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030755 [exp] 89 / 7e-21 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 88 / 2e-20 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10018167 [exp] 77 / 4e-17 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10010179 [exp] 77 / 5e-17 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10028063 [exp] 78 / 1e-16 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10013397 [exp] 78 / 1e-16 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10025612 [exp] 78 / 1e-16 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10023235 [exp] 77 / 2e-16 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10022967 [exp] 76 / 4e-16 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10024372 [exp] 76 / 4e-16 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G103900.1 pacid=42793578 polypeptide=Potri.001G103900.1.p locus=Potri.001G103900 ID=Potri.001G103900.1.v4.1 annot-version=v4.1 ATGTCTAGTGAAATGCCCTTTATAAGTAGCCACGAAAACAACAATGGATGGGATCGAGATAATTCAAGATTGATCCCTTTTGATGAATCAGCACGCATAC TCTTGGAATTCGAAGTGTCCACGTCTGTATTGGATGATTTGAGTGAAGATGACTATTCTGATTTTGAAGATGATAGTACTGATGGTCAGGAAGATATGGG TTTTGAGGATAACATGTCTTCTGTTTCTTCAGAATCATACACTAGTCATGTTCTTGATGCTAATGATCTTTCAATGCAGCTGCGGACAGAACTTGCCCTG GGTGAAGTTTCGCCCCTTCCTCCGCCGTATACTTTCACTCTTTATTCTGCTGGTTTTTATCTTGAAGATCCATCTTTGAGGTTAGCGGAAACATTGAGTG ATAATGAGTGTCCAAAGGCGCAGTCCGCGAGTAAAGAATCCATTGAAAACTTGGAGGAGGTGAAGATTGATAGGGGATCATCAAATTTGGAGTGTCCCGT TTGCTTAGAAACGATCTCAACGGGGTCCGAAGCTAAACGCATGCCATGCTTTCATATCTACCATGGGAAGTGCATTGTTGAGTGGTTAATGAATAGCAAT ACATGCCCTGTTTGTCGCTACCAGATGCCTACAGAGTCTTGA
AA sequence Show only first row Show all	>Potri.001G103900.1 pacid=42793578 polypeptide=Potri.001G103900.1.p locus=Potri.001G103900 ID=Potri.001G103900.1.v4.1 annot-version=v4.1 MSSEMPFISSHENNNGWDRDNSRLIPFDESARILLEFEVSTSVLDDLSEDDYSDFEDDSTDGQEDMGFEDNMSSVSSESYTSHVLDANDLSMQLRTELAL GEVSPLPPPYTFTLYSAGFYLEDPSLRLAETLSDNECPKAQSASKESIENLEEVKIDRGSSNLECPVCLETISTGSEAKRMPCFHIYHGKCIVEWLMNSN TCPVCRYQMPTES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26400			RING/U-box superfamily protein...		Potri.001G103900 [exp]	0	1
AT3G58850		HLH2, PAR2	phy rapidly regulated 2 (.1)		Potri.005G201500 [exp]	13.41	0.7657
AT3G58850		HLH2, PAR2	phy rapidly regulated 2 (.1)		Potri.002G060100 [exp]	27.49	0.7481

Compare expression of checked genes

Potri.001G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.