Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63640 1101 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 917 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 714 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 691 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 576 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 544 / 7e-177 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 538 / 2e-174 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 476 / 7e-151 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 432 / 3e-135 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 339 / 2e-99 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127800 [exp] 1768 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 973 / 0 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 937 / 0 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 605 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 599 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 562 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 553 / 2e-179 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.014G125700 [exp] 549 / 2e-178 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 544 / 1e-176 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002007 [exp] 1071 / 0 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 1068 / 0 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032264 [exp] 1068 / 0 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 600 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 549 / 2e-178 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 526 / 4e-171 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 530 / 6e-171 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 514 / 2e-165 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 489 / 9e-156 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 481 / 9e-153 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.001G104000.6 pacid=42790355 polypeptide=Potri.001G104000.6.p locus=Potri.001G104000 ID=Potri.001G104000.6.v4.1 annot-version=v4.1 ATGGATATTTCGCCAGAACGCAGCTTGAGCGAAAATGGGGGATATGACAGCTCTAATGAAGCTCATGCTGATGATGTCAATATTCAATCATTGGTTGAGT GGTTAAACCATGCCCTACCTCATTTAAATATGCCATTGGATGCTTCAGAGGAGGAACTGAGAGCATACTTGATTGATGGCACTGTCTTGTGTAGTATTTT GAACAAGTTCTGTCCTGGTTTAGTTGAAATGAGAGGCAGTTCTGAACCTGGACCAGAAAATATCCGAAAGTTTCTAGCAGCTATGGATGAATTGGCCTTG CCTAGGTTTGTACTTGCAGACATACAGGAGGGATACATGGAGCCAGTTCTGCAGTGTCTTGTGACCCTTAAAACACACATTGAATTTAATGGTGGGAAAG AGAGCATCCGTGAGCATCTAAGAAGAAGATGGAATCTACCAAAGATGGAGTTTTCAGAGGGAATCGATAACTCGCAAGTGGACACAATGACATATGGTGA AAACTCTTCCATATATGGAGAAGAGAGGCAAAGAGATTCTTTTGACAACAAATATGGAAGCGCGTCTGCTGCTTTGGTGCATGATGTTGTACACAATTTA TCTGAGATGTTCCAACAAAAGCAAGGGTCTTATGCTGATCTTTCAGATTCCAATATTTTGGAATTGATGAAATCAAATGGGCTGGACAATACCTCTACTC GAACATTGTTCAGCTTAGTGAACAGAATTCTGGAAGAAAGCATTGAAAGAAAGAATGGGCATGTCCATCATCAGATGGCTCATATAGTGAAGAAAGTTGT GCAAGTTATTGAACAACGGGTTTCAACTCTAGCAGTGAACTTGAAAGATCAAAACAATCTTTACAAGGTTCGCTTGGGAAAGTGCCAATCACGAATAAAA GTCTTAGAGACCCTTGCAGCTGGAACCACAGAAGAAATTCGGGTTTTGTTGTCACAGCTACAGCAAATCAAGATTGAGAAAACTAAAATAGAGGAAAAGA AAAAACTTGAAGAGCAGGAGCTACTTAGAACAAAGCAAGAGAAAATCCACAGTGATATTGAGAACTCAACGCTGAAACATGAACTAGAGATAGCCAAGAC AACACATGAAGAGCATTGCTTGCTATTGCAAGTGCAGGCTGAGGAAACTAAAGTTGAATTGGAGAAGAAATTAAAGGAACTTGAATGCTTCTTAGCAGAA TCAATGAAGAGGGTGAAAGAACTCGAGTCATTTTCTGAATCTAAATCACAGAGATGGAAAAGTAAAGAGGGCTCCTATAGAAGCTTTATAGATTATCAAT CTAGAGCTTTGAAGGAATTGAGGGCAGCTGCTGACTCTGTAAAACATGAGATCTTGAAGGCCAAAAGGAGTTACGCCGAGGAATTTAATTTCTTGGGTGT GAAGCTTAAAGGACTAGCAGATGCTGCTGCAAATTATCATTCAGTTCTTGCAGAAAATCGAAGGCTGTACAATGAGGTTCAGGATTTGAAAGGCAATATT AGAGTGTATTGTCGGATAAGACCATTCCTTCCTGGACAATCTAAGAAGCGAACAACAGTAGAATATATCGGTGAGAATGGTGAATTGGTTATATCAAATC CTTCAAAACAAGGAAAAGACAGTCATAGGCTTTTCAAATTAAACAAGGTTTTTGGTCCAGCAGCTACTCAAGAGGAGGTATTTTTAGACACCCAACCACT TATTCGGTCTGTTCTTGATGGATACAATGTATGTATATTTGCATATGGTCAAACAGGCTCAGGAAAGACCTATACAATGAGTGGGCCTAATATGACATCA CAAGAAGATTGGGGGGTCAATTACCGAGCGCTGCATGATCTTTTTCAGATCTCCCAAAACAGGAAAAGCTCCATTTCATATGAAGTTGGTGTTCAAATGG TAGAAATTTACAATGAGCAAGTTCGTGATTTACTCTCAAGTGATGGTCCTCACAGAAGACTTGGGATTTGGAGTACAACCCAACCAAATGGTTTGGCTGT CCCTGATGCCAGCATGCATGCTGTTACATCAACTGCAGATGTGTTGGAATTAATGCGCATTGGGTTAATGAACCGTGCAGTGGGCGCTACAGCTCTAAAT GAAAGAAGTAGTAGATCCCACAGTGTTCTCACCATTCATGTCTATGGCATGGACTTGGAAACTGGTGCTGTTTTACGTGGTAACCTACACTTGGTTGACC TTGCTGGTAGTGAAAGAGTGGATCGATCTGAAGCTACTGGAGAAAGGTTGAGGGAAGCACAACATATAAATAAATCATTATCTGCACTCGGGGATGTTAT ATTTTCTTTAGCGCAAAAGAGTCAGCATGTGCCATACAGAAATAGCAAACTAACTCAAGTACTTCAAAGTTCATTAGGTGGTCAAGCGAAGACCCTCATG TTTGTGCAGCTTAATCCTGATGTAGATTCCTATTCAGAAACTATAAGTACTTTGAAGTTTGCTGAGAGGGTTTCAGGGGTTGAGTTAGGTGCTGCAAAGA GCAACAAAGAGGGGAGAAATATTAGAGAACTCATGGAGCAGGTTGGATTGCTCAAAGAGACAATTTCAAGGAAAGATGAAGAGATTGAGCGGCTGCAGCA TCTCCAGGCGAGTGGCAATAGTGTGAAGTGTGATATGAATTCACGTAGGTATGATTCCTCTTCTCCAAGAAGACATTCAATTGGGACTGCACTGCATAAC CATAGGCTATCAGGAGGGAAAGGTTCAGGGCTTTTCGAGAAAGCATCTTCTGATACGGACAACTGTTCTGGGAACAGTGAAAGACACTCTGAAGCTGGTT CTGTAAAGTCAATGGATGACTTTAAGGATCTCAAAACTTTGCTTCCACAGTCAAAGTCAATGGATTACTTATCACTCAAAAAGGAATTTGTCTCTCAGCC TAAGTTTGTGGGACCAGGTGTTGATCAGAATGATAAAGAAGACCTTGATCTCTTGGGCTTTGGAGATGCAGATTCTGATGAGCGATTAAGTGACATATCT GATGGTTGTCTTTCAAGGGCTGAAACTGAAGGCTCTCTGGGTAGTGCAGTAGAGTTCACTCTTTTCCCTGAATCTAAACCTTCTGAAGTTGCAAAACCAG CCGGAAAGGCTGAGAACAAGAGCAGACTGACTTTTGCATCTGGGCTTCCTAAGCCTTCGCAAAGACCGGCGCAAACAAGATTACCACGCTTGTCTCTGGC TAAGAGCTCTGCCTCTAAGGCTTCATCGAGTATGTCAGAATCTAGGAAACCTCCTGCAAGCGGTTTCTCTGCAACCAAGCCAGGGAAACGATGGCACTGA
AA sequence Show only first row Show all	>Potri.001G104000.6 pacid=42790355 polypeptide=Potri.001G104000.6.p locus=Potri.001G104000 ID=Potri.001G104000.6.v4.1 annot-version=v4.1 MDISPERSLSENGGYDSSNEAHADDVNIQSLVEWLNHALPHLNMPLDASEEELRAYLIDGTVLCSILNKFCPGLVEMRGSSEPGPENIRKFLAAMDELAL PRFVLADIQEGYMEPVLQCLVTLKTHIEFNGGKESIREHLRRRWNLPKMEFSEGIDNSQVDTMTYGENSSIYGEERQRDSFDNKYGSASAALVHDVVHNL SEMFQQKQGSYADLSDSNILELMKSNGLDNTSTRTLFSLVNRILEESIERKNGHVHHQMAHIVKKVVQVIEQRVSTLAVNLKDQNNLYKVRLGKCQSRIK VLETLAAGTTEEIRVLLSQLQQIKIEKTKIEEKKKLEEQELLRTKQEKIHSDIENSTLKHELEIAKTTHEEHCLLLQVQAEETKVELEKKLKELECFLAE SMKRVKELESFSESKSQRWKSKEGSYRSFIDYQSRALKELRAAADSVKHEILKAKRSYAEEFNFLGVKLKGLADAAANYHSVLAENRRLYNEVQDLKGNI RVYCRIRPFLPGQSKKRTTVEYIGENGELVISNPSKQGKDSHRLFKLNKVFGPAATQEEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNMTS QEDWGVNYRALHDLFQISQNRKSSISYEVGVQMVEIYNEQVRDLLSSDGPHRRLGIWSTTQPNGLAVPDASMHAVTSTADVLELMRIGLMNRAVGATALN ERSSRSHSVLTIHVYGMDLETGAVLRGNLHLVDLAGSERVDRSEATGERLREAQHINKSLSALGDVIFSLAQKSQHVPYRNSKLTQVLQSSLGGQAKTLM FVQLNPDVDSYSETISTLKFAERVSGVELGAAKSNKEGRNIRELMEQVGLLKETISRKDEEIERLQHLQASGNSVKCDMNSRRYDSSSPRRHSIGTALHN HRLSGGKGSGLFEKASSDTDNCSGNSERHSEAGSVKSMDDFKDLKTLLPQSKSMDYLSLKKEFVSQPKFVGPGVDQNDKEDLDLLGFGDADSDERLSDIS DGCLSRAETEGSLGSAVEFTLFPESKPSEVAKPAGKAENKSRLTFASGLPKPSQRPAQTRLPRLSLAKSSASKASSSMSESRKPPASGFSATKPGKRWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	0	1
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.008G174500 [exp]	2.44	0.7719
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	8.60	0.7903	XIB.1
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	11.13	0.7590
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	22.36	0.7155
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.010G070600 [exp]	22.62	0.7481
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	31.30	0.7454	Pt-ECA3.3
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.012G126400 [exp]	34.64	0.6130	Pt-SKS1.2
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	36.74	0.7102
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	41.27	0.6188
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	41.91	0.6101

Compare expression of checked genes

Potri.001G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.