Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11570 492 / 5e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G10970 110 / 3e-27 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G21470 60 / 7e-10 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT1G56500 50 / 2e-06 haloacid dehalogenase-like hydrolase family protein (.1) AT4G39970 44 / 8e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 43 / 0.0002 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127100 [exp] 689 / 0 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.019G049000 [exp] 106 / 1e-25 AT3G10970 510 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.002G077200 [exp] 77 / 3e-15 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 71 / 2e-13 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.013G007800 [exp] 48 / 1e-05 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G147400 [exp] 47 / 1e-05 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G095200 [exp] 47 / 2e-05 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G088500 [exp] 45 / 4e-05 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035494 [exp] 538 / 0 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10002002 [exp] 537 / 0 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10029053 [exp] 112 / 1e-27 AT3G10970 539 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10034213 [exp] 111 / 2e-27 AT3G10970 537 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10018906 [exp] 75 / 1e-14 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 75 / 2e-14 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 72 / 1e-13 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10013663 [exp] 57 / 8e-09 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 57 / 1e-08 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029840 [exp] 50 / 3e-06 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G104366.1 pacid=42788468 polypeptide=Potri.001G104366.1.p locus=Potri.001G104366 ID=Potri.001G104366.1.v4.1 annot-version=v4.1 ATGGCGGATTCAATTGCTGCAGCATCTCTTATTGGGTATAGGCCACTCAGTGGAGGATTGTCTGTTAAGGATGGTTCTTACAGGAGGAAATCTTTGAGTA GTTGTTGGCGTCCTGTAAATGAGTTTGTGGGAAAAAGGATTCTTTATTCTTCTCCTATGTTGCCAAGATTGAAAATTGATATGCTAGTTAATACCTCGAT TAAGGCTCTGGCAACGGAGCTTACAAAAGAGGCGTATTCATTCAGAGAGAGAGAGAGAATACCACGGACTTGGAATTACCGAGTTGATACTGGTGCTGAT AGAAAACCAGGTTTGTGGCCACCAGAGAATAGAGCGGATAACCCTTCGTTGCATAACCCCTTGATTCGACAAGAAAGGATGGGTTGTGGTTGGTTGGGTG CTATATTTGAGTGGGAGGGTGTGATAATTGAGGATAATCCTGATCTCGAGAGGCAAGCTTGGCTCTCTCTTTCTCAAGAAGAAGGGAAACCTGCTCCTCC AGCCTTTATTTTGAGACGAGTAGAAGGGATGAAGAGTGAGCAAGCGATATCTGAAGTCTTGTGTTGGTCGAGAGACCCAGCAGAGATGAAAAGAATGGCT ACGAGGAGGGAAGAAATCTACCAATCACTGCAAGGTGGGATATATAGATTACGGACTGGTTCAAAGGAGTTTGTGAATATTTTGATGCGTCACAAGATAC CAATGGCATTGGTTTCCACACGTCCAAGAAAGACTCTCGAGAATGCAATTGGAACCATTGGGATAGAAGGGTATTTCACTGTTATTGTAGCAGCAGAAGA TGTTCACAGGGGGAAGCCGGATCCGGAGATGTTTATTTATGCAGCCCAGCTTCTAAACTTTATACCACAACGCTGTATTGTGTTTGGGAACTCTAATCAG GCCGTGGAGGCTGCCCATGATGCTTTTATGAAGTGTGTAGCTGTTGCTAGCAAGCATCCTGTGTATGAGCTTGGTGCTGCAGACTTGGCGGTGAGGAAAT TAGATGAACTTTCAATTGTTGATCTGAAAAATCTTGCTGATATTGAATCCCCAGAATTTGGGCCTCCTGAGCCAGAGTTGGAGCTGGAGCTGGAGGAGGA TAATGATCGACCTACCACAGTGGGAGTTGATGATATCTTCTGGTAA
AA sequence Show only first row Show all	>Potri.001G104366.1 pacid=42788468 polypeptide=Potri.001G104366.1.p locus=Potri.001G104366 ID=Potri.001G104366.1.v4.1 annot-version=v4.1 MADSIAAASLIGYRPLSGGLSVKDGSYRRKSLSSCWRPVNEFVGKRILYSSPMLPRLKIDMLVNTSIKALATELTKEAYSFRERERIPRTWNYRVDTGAD RKPGLWPPENRADNPSLHNPLIRQERMGCGWLGAIFEWEGVIIEDNPDLERQAWLSLSQEEGKPAPPAFILRRVEGMKSEQAISEVLCWSRDPAEMKRMA TRREEIYQSLQGGIYRLRTGSKEFVNILMRHKIPMALVSTRPRKTLENAIGTIGIEGYFTVIVAAEDVHRGKPDPEMFIYAAQLLNFIPQRCIVFGNSNQ AVEAAHDAFMKCVAVASKHPVYELGAADLAVRKLDELSIVDLKNLADIESPEFGPPEPELELELEEDNDRPTTVGVDDIFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.001G104366 [exp]	0	1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	2.00	0.9545
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	2.44	0.9493
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	7.74	0.9419
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.001G105200 [exp]	7.74	0.9142	PtrcGpx3_1
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	9.89	0.9230
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.002G256900 [exp]	12.44	0.9317
AT2G17350			unknown protein		Potri.009G169200 [exp]	12.96	0.9131
AT3G54680			proteophosphoglycan-related (....		Potri.013G120700 [exp]	13.74	0.9077
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.015G022100 [exp]	15.29	0.9162
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	16.24	0.9173

Compare expression of checked genes

Potri.001G104366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.