Plant FIBer expression Database

Potri.001G104432 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G104432.1 pacid=42788454 polypeptide=Potri.001G104432.1.p locus=Potri.001G104432 ID=Potri.001G104432.1.v4.1 annot-version=v4.1
ATGCGTCTGGTGGATCCAGATTTAAATCATCCAAGATATGGCCCAAAGTATCCCAACATAGGGTGGGTGACATACAAGCCTCACATCCTTCTGCAAGATG
TAAGTTCGGGCCGAGCGCAGCCATCGTTCGACTTCGACAATGGACATGCTAGGGACCTTTCAAGCAAACAAAGCTTTTGTCCGTCTGTATGTGAGGAAGA
TTTTTGTACTGCCTTTTTGTCTACTGGTTGCGTGGCATTTTGGAAGCTCCGGTTTGATCCTGCTTTTATAAGCTATTTTTACAAGTTAAAAGTTATTTTC
TTACAACTTTTATAA
AA sequence
>Potri.001G104432.1 pacid=42788454 polypeptide=Potri.001G104432.1.p locus=Potri.001G104432 ID=Potri.001G104432.1.v4.1 annot-version=v4.1
MRLVDPDLNHPRYGPKYPNIGWVTYKPHILLQDVSSGRAQPSFDFDNGHARDLSSKQSFCPSVCEEDFCTAFLSTGCVAFWKLRFDPAFISYFYKLKVIF
LQLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G104432
[exp]
0 1
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.001G219250
[exp]
4.89 0.7730
AT1G01490 Heavy metal transport/detoxifi... Potri.001G099500
[exp]
8.48 0.7960
AT3G61760 ADL1B DYNAMIN-like 1B (.1) Potri.002G171200
[exp]
11.83 0.7604
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.003G013026
[exp]
17.23 0.6433
AT1G28710 Nucleotide-diphospho-sugar tra... Potri.015G110600
[exp]
22.58 0.7184
AT2G40090 ATATH9 ABC2 homolog 9 (.1) Potri.008G067900
[exp]
25.92 0.6819 Pt-ATH9.2
AT5G49700 AT-hook Predicted AT-hook DNA-binding ... Potri.002G105000
[exp]
29.39 0.7173
AT3G29770 ATMES11 ARABIDOPSIS THALIANA METHYL ES... Potri.004G116500
[exp]
31.11 0.7306
AT3G24090 glutamine-fructose-6-phosphate... Potri.019G054500
[exp]
34.29 0.7551
AT4G37290 unknown protein Potri.007G049500
[exp]
44.58 0.7361

Potri.001G104432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.