Plant FIBer expression Database

Potri.001G104500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23100 865 / 0 ATECS1, CAD2, GSH1, PAD2, RML1, GSHA ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G126900
[exp]
1022 / 0 AT4G23100 881 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002001
[exp]
901 / 0 AT4G23100 858 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Lus10035496
[exp]
890 / 0 AT4G23100 858 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0286 GCS PF04107 GCS2 Glutamate-cysteine ligase family 2(GCS2)
Representative CDS sequence
>Potri.001G104500.1 pacid=42792175 polypeptide=Potri.001G104500.1.p locus=Potri.001G104500 ID=Potri.001G104500.1.v4.1 annot-version=v4.1
ATGACGCTGGTTGCCCAGGCTGGTCCATCATCCTCTATACTTAAGGAGATAAGCCGCTGTAAAGCTGCACAAAATGTGGTTATTGCTATGGCTAGAAGCA
CTGATGCATCTAAGCTAAAGGAAACTCCTCCCAGATTCTCTTCATTGTCATGTAATTCTAGCAAGACACCTCAGATTCTGAGTTCAGAGAGTCTGTCAGT
AGGAATGAAGAGAGGGCATCGAGTTGTTGTTGCCGCGAGCCCTCCTACAGAAGATGCTGTCATTGCCACAGAACCACTAACAAAAGAGGATCTTATCGGA
TACCTTGCCTCTGGTTGCAAACCTAAGGAAAATTGGAGAATAGGTACAGAACACGAGAAGTTTGGTTTTGAGATTGGAACTTTACGTCCTATGAAATATG
AACAAATTGCAGGGTTGCTTCATGGTATTGCTGAGAGATTTGACTGGGACAGAATAATGGAAGGTGACAACATCATAGGACTTCAACAGGGGAAGCAAAG
CATATCATTAGAACCTGGTGGTCAGTTTGAGCTCAGCGGTGCTCCTGTAGAAACTTTGCATCAAACGTGTGCTGAGGTTAATTCACACCTTTATCAGGTG
AAAGCTGTGGCAGAGGAAATGGGAATTGGATTCTTAGGAATTGGCTTCCAGCCCAAATGGGGACTTAAAGACATACCTGTTATGCCCAAGGGAAGATATG
ATATCATGAGGAATTACATGCCTAAAGTTGGCTCGCTAGGACTAGATATGATGTTTAGGACTTGCACCGTTCAGGTTAATCTGGACTTCATTTCTGAAGC
TGACATGATAAGAAAATTTCGTGCTGGCCTTGCTTTGCAGCCGATAGCAACAGCTCTATTTGCAAACTCACCTTTCACCGAAGGAAAACCAAATGGCTAT
CTCAGCCTAAGAAGCCATATCTGGACTGATACTGACAACAATCGTGCTGGCATGCTTCCATTTGTTTTCAATGACACCTTTGGGTTTGAGCAGTATGTTG
ATTATGCTCTTGATGTTCCGATGTATTTTGTTTATCGGAAAAAGAAGTATATTGACTGTACTGGAATGTCATTCCGGGACTTTTTGGCAGGAAAACTTCC
TTGCATTCCTGGTGAATTGCCAACTCTTAATGACTGGGAAAACCATTTGACAACAATATTTCCTGAGGTCAGGTTGAAGAGATACTTAGAGATGAGGGGT
GCTGATGGAGGGCCTTGGAGGAGGTTATGTGCTTTGCCAGCATTTTGGGTAGGGCTGTTATACGATGAAGACTCACTTCAAAGTGTTCTAGACATGACAG
CTGACTGGACCTCTGAAGAAAGACAGATGTTAAGGAATAAGGTTCCAAAGACAGGTCTAAAGACACCATTTCGGGGTGGACTGTTGAGACATGTTGCCGA
AGAAGTTCTAAAGCTGGCTAAGGATGGCTTAGAAAGGAGAGGCTTTAAGGAAGTTGGTTTCTTGAATGCAGTGTCTGATGTGGTTAGCACAGGTGTAACA
CCAGCAGAAAAGCTTTTGGAACTTTACCATGGAAAGTGGGGGCGGTCTATAGATCCTGTTTTTGAAGAGCTACTTTACTAA
AA sequence
>Potri.001G104500.1 pacid=42792175 polypeptide=Potri.001G104500.1.p locus=Potri.001G104500 ID=Potri.001G104500.1.v4.1 annot-version=v4.1
MTLVAQAGPSSSILKEISRCKAAQNVVIAMARSTDASKLKETPPRFSSLSCNSSKTPQILSSESLSVGMKRGHRVVVAASPPTEDAVIATEPLTKEDLIG
YLASGCKPKENWRIGTEHEKFGFEIGTLRPMKYEQIAGLLHGIAERFDWDRIMEGDNIIGLQQGKQSISLEPGGQFELSGAPVETLHQTCAEVNSHLYQV
KAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFISEADMIRKFRAGLALQPIATALFANSPFTEGKPNGY
LSLRSHIWTDTDNNRAGMLPFVFNDTFGFEQYVDYALDVPMYFVYRKKKYIDCTGMSFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRG
ADGGPWRRLCALPAFWVGLLYDEDSLQSVLDMTADWTSEERQMLRNKVPKTGLKTPFRGGLLRHVAEEVLKLAKDGLERRGFKEVGFLNAVSDVVSTGVT
PAEKLLELYHGKWGRSIDPVFEELLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Potri.001G104500
[exp]
0 1
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.012G077200
[exp]
4.00 0.7784
AT5G67265 unknown protein Potri.002G122800
[exp]
7.81 0.7860
AT1G07430 HAI2 highly ABA-induced PP2C gene 2... Potri.009G037300
[exp]
12.32 0.7510
AT2G21490 LEA dehydrin LEA (.1) Potri.004G158500
[exp]
15.87 0.7510
AT3G22260 Cysteine proteinases superfami... Potri.016G019700
[exp]
17.66 0.7320
AT2G39020 Acyl-CoA N-acyltransferases (N... Potri.010G224800
[exp]
24.45 0.7139
AT3G06490 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb dom... Potri.008G101400
[exp]
31.27 0.7392 MYB108.2
AT4G31830 unknown protein Potri.006G183800
[exp]
34.85 0.7294
AT2G33060 AtRLP27 receptor like protein 27 (.1) Potri.012G030125
[exp]
37.69 0.7327
AT1G43910 P-loop containing nucleoside t... Potri.007G019600
[exp]
37.74 0.7483

Potri.001G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.