Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63470 281 / 1e-92 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 278 / 1e-91 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 253 / 6e-82 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 211 / 1e-65 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 196 / 7e-60 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT2G33620 179 / 3e-53 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G22770 160 / 2e-46 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 154 / 4e-43 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 150 / 8e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 144 / 2e-39 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126500 [exp] 529 / 0 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.014G082100 [exp] 287 / 1e-95 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 276 / 2e-91 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 195 / 5e-59 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.003G090900 [exp] 188 / 2e-56 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.001G143500 [exp] 186 / 1e-55 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.002G148600 [exp] 182 / 6e-55 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 182 / 1e-54 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 181 / 5e-54 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008533 [exp] 338 / 3e-115 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 330 / 3e-112 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10008497 [exp] 263 / 3e-86 AT1G63470 225 / 4e-71 AT hook motif DNA-binding family protein (.1) Lus10001997 [exp] 252 / 3e-82 AT1G63470 174 / 1e-51 AT hook motif DNA-binding family protein (.1) Lus10030381 [exp] 215 / 4e-67 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 214 / 1e-66 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10040085 [exp] 176 / 2e-51 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10030962 [exp] 172 / 5e-50 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 171 / 5e-50 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10004022 [exp] 167 / 1e-48 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.001G104900.5 pacid=42789178 polypeptide=Potri.001G104900.5.p locus=Potri.001G104900 ID=Potri.001G104900.5.v4.1 annot-version=v4.1 ATGGATGGAAGAGAAGCCATGCCATTTTCTAGTGGGTCATCTCCATACCATATTCATAGAGGAAGTGGGTTTCTTGGGCCCGGGTATGGATCACAACATG GTGTATCGCATCCCCCACCTGGGTTCAGATCCTTGTCAAATCCTCAACTTGCAGCTCAATCAAATGTCCGGTCTGGCTCAACTGTGCCAGCATTTTCAAT AGAGCCACCAGATGTCAATTTCGGTCATGGCATTAACATGGCTGCAACCTCTGAGGTGCAAGTGGGTGAACCAGTGAAGAAGAAGCGAGGGAGGCCCCGG AAATACGGCTTGGTTGGGCAGGTTTCACTTGGATTGTCTCCCTTGCCAAATAAGCCTAAGCCATCTTCAGGGGAGGATTCTTCCACCTCAAAAAGAAATA GAGGGCGGCCGCCTGGGAGTGGAAGGAAGCAGCAATTGGCGACTCTTGGTGAATGGATGAACAGTTCTGCTGGAGTAGCTTTTTCTCCGCATGTGATCAG CATTGAAGTTGGAGAGGATATTGTTTCAAAACTGTTGTCATTTTCCCAACAGAGGCCAAGGGCTGTTTGCATCTTGTCTGGCACTGGTACAGTTTCCTCA GTAACACTCCGTCAGCCAGCATCTTCTGGGTCCTCTATCACATATGAGGGCCGTTTCGAGATATTATGCTTGTCAGGCTCTTACTTGGTTGCCGAAGATG GTGGGCCTCGCAATCGAACTGGAGGTATAAGTGCTTCTCTTTCTAGTCCTGATGGCCATGTCATTGGTGGTGCAATTGCAATGCTTATTGCTGCTAGCCC AGTTCAGGTGGTGGCCTGTAGTTTTGTTTATGGTGTTTCTAAGAAGGATAAACAAGTAAGCCATCCCATAAACGAAAAAGACTCCACATCTTGGCCTGAT GATAATTTAGATAACCTGAAAGCAGTCACACCTACTAGCATGCCTCCTCAAAGTTTCACTTCCTCTCCGACGAGCATTTGGCCTGGACCGCGAGCAGTTG ATATGAGAAACCCCCACACTGATATTGACTTGACGCGAGGATGA
AA sequence Show only first row Show all	>Potri.001G104900.5 pacid=42789178 polypeptide=Potri.001G104900.5.p locus=Potri.001G104900 ID=Potri.001G104900.5.v4.1 annot-version=v4.1 MDGREAMPFSSGSSPYHIHRGSGFLGPGYGSQHGVSHPPPGFRSLSNPQLAAQSNVRSGSTVPAFSIEPPDVNFGHGINMAATSEVQVGEPVKKKRGRPR KYGLVGQVSLGLSPLPNKPKPSSGEDSSTSKRNRGRPPGSGRKQQLATLGEWMNSSAGVAFSPHVISIEVGEDIVSKLLSFSQQRPRAVCILSGTGTVSS VTLRQPASSGSSITYEGRFEILCLSGSYLVAEDGGPRNRTGGISASLSSPDGHVIGGAIAMLIAASPVQVVACSFVYGVSKKDKQVSHPINEKDSTSWPD DNLDNLKAVTPTSMPPQSFTSSPTSIWPGPRAVDMRNPHTDIDLTRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	0	1
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	3.46	0.8199
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	4.24	0.8145
AT3G59670			unknown protein		Potri.013G127100 [exp]	4.24	0.7975
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Potri.001G231800 [exp]	12.36	0.7148	Pt-CPSF100.2
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	12.96	0.7934
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.005G147100 [exp]	14.07	0.7042	HAT22.2
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	17.88	0.7505	MYB222
AT3G44716			unknown protein		Potri.009G148200 [exp]	18.97	0.7513
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.007G002200 [exp]	19.62	0.7679
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	21.90	0.7166

Compare expression of checked genes

Potri.001G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.