Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11610 1568 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1150 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G00700 1145 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 1142 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1121 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G22610 1105 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1085 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 1062 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 1026 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 872 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125900 [exp] 1857 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 1486 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 1484 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1183 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1150 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1136 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1119 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1116 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1108 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000605 [exp] 1711 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1356 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1139 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1139 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1058 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1057 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 991 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 905 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 788 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 763 / 0 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G105400.2 pacid=42789946 polypeptide=Potri.001G105400.2.p locus=Potri.001G105400 ID=Potri.001G105400.2.v4.1 annot-version=v4.1 ATGATGAGCAACATTAAGCTAGGGGTAGAAGTGGTGAGTGCCCACAATCTTTTGCCCAAAGACGAGCACGGTTCATCCAGTGCCTTTGTAGAGCTCGACT TTGATGGCCAGAGGTTCCGCACGACCATCAAAGAAAAGGATCTCCATCCTGTGTGGAATGAGAGTTTCTACTTCAACGTCTCTGACCCTTCCAACCTCCA CTATCTCACTCTTGATGCCCATGTTTACTGTAACATCAGAGCTACCAACTCCAGGTCCTTCCTTGGTAAGGTTTGCCTCACTGGGAATTCATTTGTACTG CACTCTGATGCTGTTGTGTTACACTACCCTCTGGAAAAGCGTGGAATTTTCTCACGTGTGAGAGGAGAGCTTGGCCTGAAAGTTTATATTACCGATGATG CATCCATCAAATCTTCTACCCCACTTCCTGCAGTTGAATCTTTGCCAGCTAAGGATCCAGGCTTAACACATACTGAGGCTCCGGTGGTCCACCCCATGAC AAATTCTGTACCTCATAAAAGAGTTGAGAGACACACCTTTCATCATCTTCCTAACCCAAATCACCAGCAAAATCAGCATCAGAATCATTCTTCTGCTCCA GCAATTAGCCATCATGTACCAAAGTACGTGGCTGACGAGATGAAAGCTGCGGAAACACAGCCTCCGAAGTTAGTTCGCATGTACTCTGCGTCATCATCAC AACCTGTTGACTATGCCCTTAAAGAGACAAGTCCCTTTCTTGGCGGGGGAAGAGTTGTTGGGGGGCGGGTTATTCACGGAGACAAGACCGCAAGCACTTA TGATCTTGTTGAACGGATGTACTTTCTGTACGTGAGAGTTGTTAAAGCTCGTGATCTTCCTGCCATGGATGTTACAGGAAGTCTTGATCCATTTGTCGAG GTGAGAATTGGAAACTACAGAGGAATTACAAAGCACTTTGAAAAAAAGCAAAATCCAGAGTGGAATCAGGTGTTTGCTTTTTCAAGGGAACGGATGCAAG CTTCTGTTTTAGAAGTTGTGATCAAGGACAAGGATCTTGTTAAAGATGACTTTGTGGGCGTCATAAGGTTTGACATCAATGAGGTTCCATTGCGAGTCCC CCCAGATAGTCCTCTAGCTCCAGAGTGGTATCGGCTTGAGGACAAGAAGGGAGAGAAGATAAAGGGCGAGCTGATGCTTGCAGTATGGATTGGAACCCAA GCAGACGAGGCCTTTCCTGATGCCTGGCATTCTGATGCAGCTACCCCTGTAGATAGTACACCGGCTTCCTCCACTGTGATACGTTCAAAGGTCTATCATG CACCGAGGCTGTGGTATGTACGTGTTAACGTTGTTGAGGCCCAAGACTTAGTCCCATCAGAGAAGAACCGTTTCCCTGAAGTGTATGTTAAGGTACAGAT TGGAAACCAAGTTTTGAAGACGAAGACATATCAGGCTCGGACTTTTAGTGCCTTATGGAATGAGGATCTTTTATTTGTGGCTGCTGAACCCTTTGAAGAC CACCTGGTTCTTTCGGTTGAGGATCGTGTCGGTCCTGGAAAAGATGAGATAATTGGGAGGGTCATTATCCCGTTGAGCTCTGTGGAGAAGCGTGCTGACG ATAGGATAATTCATTCTTGTTGGTTTAACCTGGAAAAGCCAGTTGCTGTGGATGTAGATCAGCTGAAGAAAGATAAGTTCTCTAGCCGTATCCATCTTCG AGTCTGCTTAGATGGAGGATACCATGTTCTTGACGAGTCAACTCATTACAGCAGTGATCTTCGTCCTACAGCAAAACAGCTTTGGAGGCCTCCTATTGGG ATGCTGGAACTTGGCATCTTAAATGCTGTAGGACTCCATCCTATGAAAACACGAGATGGAAGGGGTACATCGGATACATACTGTGTTGCAAAGTATGGTC ACAAATGGGTCCGGACACGCACCCTTATTGACAACCTGTCTCCCAAATACAATGAGCAGTACACATGGGAAGTTTTTGATCCAGCTACAGTTCTTACAGT TGGTGTATTTGACAACAACCAGCTTGGGGAAAAAGGTTCAAGTGGAAAGGATCTAAAGATTGGGAAGGTTCGGATTCGCATCTCCACACTCGAAACTGGG CGTGTTTATACTCACTCTTATCCCTTGCTGGTTCTTCATCCTACTGGAGTTAAGAAGATGGGGGAGTTGCATTTGGCAATCAGATTTACATGCATATCTT TTGCGAACATGCTTTATCAGTACTCACGACCACTTCTACCCAAAATGCACTATATCAGGCCTTTCACTGTGATGCAACTAGATATGCTTCGCCACCAAGC TGTCAATATAGTGGCATTACGATTAGGTCGGGCAGAACCTCCTCTTAGGAAGGAAGTGGTGGAGTATATGTCAGATGTTGATGCACACCTCTGGAGCATG CGCCGAAGCAAGGCAAATTTCTTTCGATTAATGACAATTTTCTCAGGGTTATTTGCAGCTGGAAAGTGGTTTGGGGATATTTGCATGTGGAAGAATCCTA TCACTACCGTGCTTGTTCATGTGCTCTATCTCATGCTTGCTTGCTTCCCAGAACTTATTCTGCCCACAGTTTTTCTTTACATGTTTCTGATAGGCATTTG GAATTACCGATATCGACCAAGGTACCCTCCCCATATGAACACAAAGATTTCACAAGCTGAGGTAGTGCATCCTGATGAGCTTGACGAGGAGTTTGATACA TTCCCAACAAGCAGGAGCCCTGAGCTGGTCAGAATGAGGTACGATAGGTTACGAAGTGTTTCTGGAAGGATTCAAACAGTTGTGGGGGATATAGCAACCC AAGGAGAGCGATTTCAGGCACTGTTAAGCTGGCGCGATCCACGCGCCACTGCCATCTTTGTTATATTCTGCCTCGTAGCTGCTCTGGTTTTATTTGTGAC ACCATTTCAGGTCATAGCAGCTTTGGCTGGCTTCTACATGATGAGGCATCCAAGATTTCGCTACAGGACACCATCTGTGCCCATAAACTTCTTTCGCCGG CTTCCTTCTCGGACAGATAGTATGCTGTGA
AA sequence Show only first row Show all	>Potri.001G105400.2 pacid=42789946 polypeptide=Potri.001G105400.2.p locus=Potri.001G105400 ID=Potri.001G105400.2.v4.1 annot-version=v4.1 MMSNIKLGVEVVSAHNLLPKDEHGSSSAFVELDFDGQRFRTTIKEKDLHPVWNESFYFNVSDPSNLHYLTLDAHVYCNIRATNSRSFLGKVCLTGNSFVL HSDAVVLHYPLEKRGIFSRVRGELGLKVYITDDASIKSSTPLPAVESLPAKDPGLTHTEAPVVHPMTNSVPHKRVERHTFHHLPNPNHQQNQHQNHSSAP AISHHVPKYVADEMKAAETQPPKLVRMYSASSSQPVDYALKETSPFLGGGRVVGGRVIHGDKTASTYDLVERMYFLYVRVVKARDLPAMDVTGSLDPFVE VRIGNYRGITKHFEKKQNPEWNQVFAFSRERMQASVLEVVIKDKDLVKDDFVGVIRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQ ADEAFPDAWHSDAATPVDSTPASSTVIRSKVYHAPRLWYVRVNVVEAQDLVPSEKNRFPEVYVKVQIGNQVLKTKTYQARTFSALWNEDLLFVAAEPFED HLVLSVEDRVGPGKDEIIGRVIIPLSSVEKRADDRIIHSCWFNLEKPVAVDVDQLKKDKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPPIG MLELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLIDNLSPKYNEQYTWEVFDPATVLTVGVFDNNQLGEKGSSGKDLKIGKVRIRISTLETG RVYTHSYPLLVLHPTGVKKMGELHLAIRFTCISFANMLYQYSRPLLPKMHYIRPFTVMQLDMLRHQAVNIVALRLGRAEPPLRKEVVEYMSDVDAHLWSM RRSKANFFRLMTIFSGLFAAGKWFGDICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNTKISQAEVVHPDELDEEFDT FPTSRSPELVRMRYDRLRSVSGRIQTVVGDIATQGERFQALLSWRDPRATAIFVIFCLVAALVLFVTPFQVIAALAGFYMMRHPRFRYRTPSVPINFFRR LPSRTDSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	0	1
AT4G27870			Vacuolar iron transporter (VIT...		Potri.001G127900 [exp]	1.00	0.9490
AT3G19430			late embryogenesis abundant pr...		Potri.009G145700 [exp]	1.41	0.9262
					Potri.001G388200 [exp]	2.82	0.9251
AT1G45688			unknown protein		Potri.007G045000 [exp]	4.24	0.8906
					Potri.001G388450 [exp]	5.00	0.8940
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248975 [exp]	5.19	0.8869
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.015G126900 [exp]	9.16	0.8428	Pt-ATTPPA.2
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	9.38	0.8900
AT1G72490			unknown protein		Potri.006G140100 [exp]	9.94	0.8779
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012400 [exp]	10.09	0.8689

Compare expression of checked genes

Potri.001G105400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.