Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63440 1538 / 0 HMA5 heavy metal atpase 5 (.1) AT5G44790 884 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G33520 368 / 6e-112 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 363 / 1e-110 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G30110 263 / 5e-74 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 244 / 7e-67 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 168 / 5e-44 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 163 / 4e-41 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT3G57330 122 / 6e-28 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 121 / 7e-28 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125600 [exp] 1842 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 1583 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 1046 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 885 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 880 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G024000 [exp] 379 / 1e-115 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 365 / 1e-110 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 359 / 2e-108 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.006G076900 [exp] 269 / 4e-75 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008309 [exp] 1622 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 1014 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 839 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038364 [exp] 832 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 540 / 2e-177 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 357 / 5e-108 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10025467 [exp] 268 / 2e-75 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 263 / 1e-73 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038070 [exp] 256 / 8e-72 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10011510 [exp] 177 / 3e-46 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G105800.2 pacid=42791522 polypeptide=Potri.001G105800.2.p locus=Potri.001G105800 ID=Potri.001G105800.2.v4.1 annot-version=v4.1 ATGGCAACGAAGTTCTTGGCACTAGCTTGCATACGCAAAGAAAGTTATGGGGACTTATCGCCAAGGCCAAGGTATCCTTCGATGCCCAAGTACCCGAAAG GGGTTTCGGCTCAAGAAACGAACGTGGAAGGATCAGAGGCAAAGGCAGTGTTTTGTGTTTTGGGAATGACATGCGCTGCTTGTGCTGGATCTGTTGAGAA GGCTGTCAAAAGGCTTCCTGGAATACGAGAGGCTGTTGTTGATGTCTTGAATAATAAGGCTCAAGTTCTGTTCTACCCCAGTTTTGTTAATGAAGAAACC ATTCGTGAGACTATTGAAGATGCTGGATTTGAGGCCACGTTGATTCAAGAAGAAACCAGTGATAAATCCACCCAAGTTTGCCGAATTCGTATTAATGGAA TGACTTGCACTTCTTGCTCCTCTACTGTTGAACAAGCTTTGCAAGCAATTCCAGGTGTGCAAAAAGCTCAAGTAGCCTTAGCAACTGAAGAAGCAGAAGT TCATTATGATCCAAAGATCCTGGGCTGCAATCAGATCTTAGAAGCGATAAATGACACAGGATTTGAAGCTGTACTTCTTAGTACTGGTGAAGACATGGGC AAGATAGGGCTTAAAGTTGATGGTGTAAGAACACATAATTCGATGAGAATGATTGAAAAATCTCTTCAGGCACTCCCCGGTGTTCAAAGTATAGACATAG ATTCTGAAGTGAACAAAATCTCCCTTTCTTACAAACCAGATGTAACTGGTCCTAGAAATTTTATCAAAGTGATTGAATCAACGGGGACAGGGCGATTCAA GGCAATGATATTTCCTGAAGGAGGAGGAAGAGAAAGCCATAGAAAAGAGGAAATTAAGCAATACTACCGGTCCTTCCTGTGGAGTTTGGTTTTCACAGTT CCAGTGTTCTTAATAGCCATGATTTTTATGTATATCCCTGGAATTAAGGATGCTCTAGACACCAAATTAGTCAATATGCTATCTATAGGAGCAATCTTGA GGTGGGTTCTATCTACTCCAGTGCAGTTCATTGTAGGCCGGAGATTCTATACAGGTTCCTATAAAGCATTGAGGCATGGTTCTGCTAATATGGATGTGTT GATCGCCTTAGGAACTAATGCAGCCTACTTTTATTCAGTCTATTCGGTGTTGAGAGCTGCTTCCTCTACAGATTTTGAGTCCACAGATTTCTTTGAGACT AGCTCAATGCTTATCTCATTCATTCTTCTTGGGAAGTATCTTGAGGTTCTGGCTAAGGGAAAGACATCTGACGCCATTGCCAAGCTTATGAACTTGACAC CTGGCACCGCAATATTGTTGACTTTAGATGATGAAGGAAATGTGATCAGTGAAGAAGAAATTGATAGTCGGTTGATACAAAGGAATGATGTGATTAAGAT CGTACCTGGTGCAAAAGCAGCTTCAGATGGTTTTGTTATTTGGGGGCAGAGCCATGTGAATGAGAGCATGATAACAGGAGAAGCAAGGCCAGTGGCAAAG AGGAAAGGTGACACGGTGATTGGTGGGACCGTGAATGAGAATGGGGTGTTGCATATTAAGGCAACGAGGGTGGGATCGGAGAGTGCTCTTTCACAGATTG TTCGACTTGTTGAGTCAGCTCAGATGGCTAAAGCTCCTGTACAGAAGTTTGCTGATCGTATCTCCAAATACTTTGTGCCTCTTGTTATTATTCTTTCCAT TTCAACCTGGCTTGCGTGGTTTTTAGCTGGAAAGTTCCATGGATATCCAGACTCTTGGATACCAAAGTCAATGGATAGTTTTCAGCTTGCTCTCCAATTC GGCATCTCTGTTATGGTCATAGCCTGCCCTTGTGCTCTCGGATTAGCAACTCCAACTGCTGTCATGGTTGGTACTGGAGTTGGTGCATCTCAGGGCATTC TAATCAAAGGTGGCCAAGCATTAGAAAGTGCACATAAGGTGAATTGCCTTGTCTTTGACAAGACAGGAACTCTTACGATCGGAAAGCCTGTGGTTGTTAA CACAAGACTCTTGAAAAATATGGTGCTGCGAGATTTTTACGAACTCATAGCTGCTGCTGAGGTAAACAGTGAGCACCCATTGGCCAAGGCCATTGTAGAG TATGCCAAGAAATTCAGAGAAGATGAAGAGAACCCTATGTGGCCAGAAGCACAAGATTTTCAGTCAATTACAGGCCACGGAGTGAAGGCTATTGTCAGAA ACAAGGAAGTGATAGTGGGAAATAAAAGCTTGATGTTGGAACACAACATCCCCATTTCAATTGATGCAGAAGAAATGCTTGCAGAAACTGAAGGGATGGC TCAAACTGGGATTTTAGTTTCTATTGATAGGGAAGTGACTGGAGTTCTAGCCATATCAGATCCATTGAAACCAGGTGCTCACGAAGTCATTTCCATTCTC AAGTCCATGAAAGTTAGGAGCATCATGGTCACAGGTGATAATTCGGGAACTGCTAATTCGATTGCCAAGGAAGTTGGGATTGAAACTGTTATCGCAGAAG CCAAGCCTGAGCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTGCAGGCTATATAGTGGCAATGGTAGGTGATGGTATAAATGATTCACCAGCACTCGT TGCAGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGATATTGCTATAGAGGCGGCTGACATAGTTCTAATGAAGAGCAACCTTGAGGATGTGATCACT GCCATAGACCTCTCCCGGAAAACCTTTTCCCGAATTCGCTTGAACTACATTTGGGCTTTGGGGTATAACCTCCTGGGCATCCCAATAGCTGGTGGGGTCC TTTTTCCGGGCACTGGATTTCGTTTACCACCCTGGATTGCTGGAGCTGCAATGGCAGCCTCTTCCGTCAGTGTTGTTGTGTGCTCACTCCTGTTGAAGAA TTATAGAAGGCCCAAGATGCTGGAACATCTAGATATTGGTGGAATAAAGATTGAGTGA
AA sequence Show only first row Show all	>Potri.001G105800.2 pacid=42791522 polypeptide=Potri.001G105800.2.p locus=Potri.001G105800 ID=Potri.001G105800.2.v4.1 annot-version=v4.1 MATKFLALACIRKESYGDLSPRPRYPSMPKYPKGVSAQETNVEGSEAKAVFCVLGMTCAACAGSVEKAVKRLPGIREAVVDVLNNKAQVLFYPSFVNEET IRETIEDAGFEATLIQEETSDKSTQVCRIRINGMTCTSCSSTVEQALQAIPGVQKAQVALATEEAEVHYDPKILGCNQILEAINDTGFEAVLLSTGEDMG KIGLKVDGVRTHNSMRMIEKSLQALPGVQSIDIDSEVNKISLSYKPDVTGPRNFIKVIESTGTGRFKAMIFPEGGGRESHRKEEIKQYYRSFLWSLVFTV PVFLIAMIFMYIPGIKDALDTKLVNMLSIGAILRWVLSTPVQFIVGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYSVLRAASSTDFESTDFFET SSMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPGTAILLTLDDEGNVISEEEIDSRLIQRNDVIKIVPGAKAASDGFVIWGQSHVNESMITGEARPVAK RKGDTVIGGTVNENGVLHIKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSISTWLAWFLAGKFHGYPDSWIPKSMDSFQLALQF GISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALESAHKVNCLVFDKTGTLTIGKPVVVNTRLLKNMVLRDFYELIAAAEVNSEHPLAKAIVE YAKKFREDEENPMWPEAQDFQSITGHGVKAIVRNKEVIVGNKSLMLEHNIPISIDAEEMLAETEGMAQTGILVSIDREVTGVLAISDPLKPGAHEVISIL KSMKVRSIMVTGDNSGTANSIAKEVGIETVIAEAKPEQKAEKVKELQAAGYIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVIT AIDLSRKTFSRIRLNYIWALGYNLLGIPIAGGVLFPGTGFRLPPWIAGAAMAASSVSVVVCSLLLKNYRRPKMLEHLDIGGIKIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G105800 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	3.16	0.8280
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	7.07	0.7986
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	7.48	0.7642
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.016G112300 [exp]	10.19	0.7831
AT3G22550			Protein of unknown function (D...		Potri.005G211500 [exp]	11.31	0.7250
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G155100 [exp]	11.61	0.7344	HAT1.3
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	11.66	0.7567
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	12.48	0.7803
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.011G129800 [exp]	13.96	0.7827
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	14.42	0.7764	SRPP.2

Compare expression of checked genes

Potri.001G105800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.