Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48990 751 / 0 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 187 / 1e-52 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 172 / 2e-47 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT3G21240 169 / 5e-46 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT4G19010 169 / 8e-46 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 163 / 6e-44 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G65060 163 / 8e-44 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20500 162 / 1e-43 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 161 / 4e-43 4CL5 4-coumarate:CoA ligase 5 (.1) AT5G38120 160 / 6e-43 4CL8 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144700 [exp] 796 / 0 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 187 / 2e-52 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 181 / 2e-50 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 180 / 7e-50 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 177 / 4e-49 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 173 / 1e-47 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 169 / 4e-46 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.018G094200 [exp] 169 / 7e-46 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.001G055700 [exp] 169 / 7e-46 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039232 [exp] 744 / 0 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10027478 [exp] 364 / 2e-123 AT3G48990 440 / 1e-153 AMP-dependent synthetase and ligase family protein (.1) Lus10027477 [exp] 340 / 1e-115 AT3G48990 355 / 2e-122 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 195 / 2e-55 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 192 / 3e-54 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 181 / 2e-50 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 176 / 2e-48 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026143 [exp] 166 / 6e-45 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10015998 [exp] 162 / 3e-43 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 161 / 3e-42 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G105900.1 pacid=42793266 polypeptide=Potri.001G105900.1.p locus=Potri.001G105900 ID=Potri.001G105900.1.v4.1 annot-version=v4.1 ATGGAGTCCCTCACTTTGACTGCTTTGTTAAACAAATCAGCCAAGGATTTCCCAAATCGTCGCGCTATATCACTCTCTGGCAGACTCGATTTAACACACG CGCAATTGCAACAGATTGTCGATCATGCCGCCTCTCTACTTATCTCCGCCGGCATCAATCCCGGTGATGTCGTCGCTCTCACCTTCCCCAACACCATCGA GTTTGTGGTCATGTTTCTGGCTGTAATTCGTTGCCGAGCCACAGCTGCGCCGTTAAACCAGGCTTACACAGCCGAGGAGTTCGAGTTTTACCTCTCCGAC TCAGGATCAAAACTCCTAATCATGCCACAAGAGCCAATCCTACCGGCACTAACCGCGGCTTCTAAGCTCAAAATCCCTCACGTGACATCCACGCTTGACA TCCAATCCAAAAGAGTAACTCTCTCAACCGAGTCAGAATCAGTACCTGACGCTGTTGACGATGTCGTCAACGACTCATCTGACGTGGCTTTGTTCTTACA CACTTCTGGCACCACGAGCCGGCCCAAAGGCGTTCCTTTGACTCAGCTGAATTTGGCCTCTTCGGTTTTGAACATAAAATCGGTTTACAAACTCACCGAG TCTGACTCCACTGTCCTCGTGTTGCCGCTATTTCACGTGCATGGATTATTAGCTGGGTTATTGAGCTCACTAGTGGCTGGAGCCGCCGTAGCTCTTCCAG CCGCCGGGAGATTTTCTGCTTCAACATTTTGGAAAGACATGGTTTCATATAATGCCACGTGGTACACTGCAGTCCCGACAATTCATCAAATTATTCTCGA CCGCCATGTCAGCAAGCCAGAGCCGGCTTACCCCAAGCTAAGGTTTATCAGGAGCTGTAGCGCTTCTTTGGCGCCGGTTATCATGGAACGGCTAGAGGAG GCCTTTGGCGCACCGGTTTTGGAGGCTTATGCAATGACTGAGGCAGCTCATTTAATGGCTTCCAACCCGTTACCCGAAGATGGCCCCCATAAACCCGGGT CGGTCGGACGACCCATTGGGCAGGAAATGGCCATTTTAAATGAGAATGGGGTGGTTCAACCGGTTGGAGTTAGTGGCGAGGTGTGTATTAGAGGGCCTAA TGTGACCAAGGGTTATGAGAATAATCCTGAAGGCAATAAGGCTGCTTTTCAATTCGGGTGGTTCCATACAGGGGATGTCGGTTTTCTTGATGAGGATGGA TTTTTGCACCTTGTCGGTCGGATCAAGGAGCTTATTAACCGTGGAGGGGAGAAGATATCACCAATTGAAGTGGATGCAGTACTTTTGTCTCATCCTAACA TTGCTCAGGCTGTCGCCTTCGGAGTTCCGGATGAAAAATATGGGGAAGAGATAAATTGTGCCATAATTCCAAGGAAAGGATCGAACATTGATGAAGATGA GGTGCTCAGCTTCTGCAAGAAAAATCTTGCAACTTTCAAGGTTCCCAAGAAGGTATTCATCACTGATTCACTCCCGAAAACCGCCACCGGAAAGATTCAG CGTAGGCTTGTAGCGGAGCATTTTCTTGCTCAAATCTCCACCGCTAAAGTACCCAAGTTTGGAGCTTAA
AA sequence Show only first row Show all	>Potri.001G105900.1 pacid=42793266 polypeptide=Potri.001G105900.1.p locus=Potri.001G105900 ID=Potri.001G105900.1.v4.1 annot-version=v4.1 MESLTLTALLNKSAKDFPNRRAISLSGRLDLTHAQLQQIVDHAASLLISAGINPGDVVALTFPNTIEFVVMFLAVIRCRATAAPLNQAYTAEEFEFYLSD SGSKLLIMPQEPILPALTAASKLKIPHVTSTLDIQSKRVTLSTESESVPDAVDDVVNDSSDVALFLHTSGTTSRPKGVPLTQLNLASSVLNIKSVYKLTE SDSTVLVLPLFHVHGLLAGLLSSLVAGAAVALPAAGRFSASTFWKDMVSYNATWYTAVPTIHQIILDRHVSKPEPAYPKLRFIRSCSASLAPVIMERLEE AFGAPVLEAYAMTEAAHLMASNPLPEDGPHKPGSVGRPIGQEMAILNENGVVQPVGVSGEVCIRGPNVTKGYENNPEGNKAAFQFGWFHTGDVGFLDEDG FLHLVGRIKELINRGGEKISPIEVDAVLLSHPNIAQAVAFGVPDEKYGEEINCAIIPRKGSNIDEDEVLSFCKKNLATFKVPKKVFITDSLPKTATGKIQ RRLVAEHFLAQISTAKVPKFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48990			AMP-dependent synthetase and l...		Potri.001G105900 [exp]	0	1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	2.64	0.9054
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.002G104400 [exp]	3.00	0.8684
AT2G46080			unknown protein		Potri.008G085600 [exp]	3.16	0.9017
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	6.00	0.8952	Pt-CRCK3.2
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	8.71	0.8937
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	11.74	0.8882
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	12.04	0.8906
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	14.07	0.8634
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	14.42	0.8831
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.008G148000 [exp]	14.49	0.8405	APK2.2

Compare expression of checked genes

Potri.001G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.