Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11640 459 / 2e-163 ATSR serine racemase (.1) AT3G10050 110 / 1e-26 OMR1 L-O-methylthreonine resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118400 [exp] 112 / 4e-27 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008490 [exp] 501 / 5e-180 AT4G11640 489 / 3e-175 serine racemase (.1) Lus10027728 [exp] 131 / 9e-34 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 119 / 1e-29 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10014390 [exp] 103 / 3e-24 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10023884 [exp] 103 / 5e-24 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G106000.1 pacid=42791112 polypeptide=Potri.001G106000.1.p locus=Potri.001G106000 ID=Potri.001G106000.1.v4.1 annot-version=v4.1 ATGGAACCAAATAGTGAAATAACCAAAGAGAAGTATGGTGTTGATATCTCCTCCATAAGGGAGGCACAAGTGCGCATCGACCCATACATACACAAAACTC CAGTCTTTACCTCAGGAAGTCTGAATGACATGTGTAGAAGGAAGCTGTTTTTCAAATGTGAATGTTTTCAGAAAGGTGGGGCATTCAAGTTCAGAGGTGC GTGCAATGCCATATTTTCACTTAATAAAGATCAGGCAGATAAAGGGGTTGTAACTCACAGCAGTGGCAACCACGCTGCAGCATTGGCTTTGGCTGCAGAC TTGCGGGATATCCCAGCATATGTAGTTATACCCAACAATGCTCCAAATTGCAAAATTCAGAATGTGATACGTTACAGCGGTCAAATTACATATTCTCAGC CTACATTACAGTCAAGGGAGACTACCACAACAAAGATCATGCAAGAAACTGGTGCAGTTCTCATCCATCCTTATAATGATGTGCGCATAATAAGTGGGCA GGGTACCATAGCATTGGAGCTTCTGGAGCAAGCCCCAGAAATTGACACTATAATAGTTCCTATTAGCGGAGGTGGTTTGATATCCGGGGTGGCATTGGCT GCTAAGTCCATCAACCCTTCCATTCGAATTTTGGCTGCTGAGCCTTGTGGAGCTAATGATGCAGCTCTATCCAAAGCAGCTGGAGAGATTGTAAAGTTGC CTGAAACCAACACCATTGCAGATGGTCTTCGAGCTTCTCTTGGAAGTCTTACCTGGCCAGTGGTTCGAGATTTGGTTGATGCTGTTATAACAGTGGAAGA TCAGGAGATAATAGAAGCCACGAAACTCTGTTATGAGGTTCTGAAAGTCGTAGTAGAACCTAGTGGAGCTATAGGCCTTGCAGCTGTTTTATCTGATAGT TTTCTGAATAACCCTGCCTGGAAGGATAGCAACCACGTGGGAATCGTGCTTTCAGGAGGTAATCTGGATCTTGGTGTTCTTTGGGATTCAATTTGCGGCC TGTAA
AA sequence Show only first row Show all	>Potri.001G106000.1 pacid=42791112 polypeptide=Potri.001G106000.1.p locus=Potri.001G106000 ID=Potri.001G106000.1.v4.1 annot-version=v4.1 MEPNSEITKEKYGVDISSIREAQVRIDPYIHKTPVFTSGSLNDMCRRKLFFKCECFQKGGAFKFRGACNAIFSLNKDQADKGVVTHSSGNHAAALALAAD LRDIPAYVVIPNNAPNCKIQNVIRYSGQITYSQPTLQSRETTTTKIMQETGAVLIHPYNDVRIISGQGTIALELLEQAPEIDTIIVPISGGGLISGVALA AKSINPSIRILAAEPCGANDAALSKAAGEIVKLPETNTIADGLRASLGSLTWPVVRDLVDAVITVEDQEIIEATKLCYEVLKVVVEPSGAIGLAAVLSDS FLNNPAWKDSNHVGIVLSGGNLDLGVLWDSICGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11640		ATSR	serine racemase (.1)		Potri.001G106000 [exp]	0	1
AT5G60160			Zn-dependent exopeptidases sup...		Potri.015G092700 [exp]	2.64	0.8593
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	5.00	0.8642
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	6.92	0.8816
AT4G31980			unknown protein		Potri.003G209500 [exp]	7.93	0.8651
AT1G30540			Actin-like ATPase superfamily ...		Potri.014G143500 [exp]	9.89	0.8225
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.002G169400 [exp]	11.22	0.8440
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	12.64	0.8529
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Potri.016G003200 [exp]	14.66	0.8282
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	16.52	0.8473
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.001G144100 [exp]	17.14	0.8465

Compare expression of checked genes

Potri.001G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.