Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63430 838 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 738 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G18640 299 / 8e-92 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 275 / 9e-83 Leucine-rich repeat protein kinase family protein (.1.2) AT2G40270 208 / 1e-59 Protein kinase family protein (.1.2) AT5G58540 202 / 3e-59 Protein kinase superfamily protein (.1.2.3) AT3G56050 205 / 1e-58 Protein kinase family protein (.1.2) AT1G31420 194 / 1e-53 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G45780 191 / 1e-52 Leucine-rich repeat protein kinase family protein (.1) AT4G22130 182 / 6e-49 SRF8 STRUBBELIG-receptor family 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124800 [exp] 1129 / 0 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G072100 [exp] 305 / 1e-94 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.011G067400 [exp] 302 / 9e-93 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 290 / 5e-88 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.009G075400 [exp] 259 / 8e-77 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 251 / 9e-74 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 229 / 5e-66 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G105000 [exp] 192 / 3e-53 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 192 / 4e-53 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008310 [exp] 915 / 0 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 903 / 0 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 899 / 0 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 893 / 0 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 319 / 1e-99 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 308 / 2e-95 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 293 / 9e-90 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 265 / 3e-79 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 246 / 5e-72 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 241 / 1e-70 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G106600.1 pacid=42788729 polypeptide=Potri.001G106600.1.p locus=Potri.001G106600 ID=Potri.001G106600.1.v4.1 annot-version=v4.1 ATGAGATCCTATGCTTCGCTTCAGCTTCTTTCTGTTTTTTCTCTTCTTCTTTTTGTGACTTGTGACCCCTTTGCCAGAGATGAAGTTTGGGCACTTACAG CATTCAAGGAAGCTATATATGAAGACCCGCATATGGTTTTGTCCAGTTGGAATGCCTTAGATGCAGATCCTTGTGGTTGGTCAGGCATTTCCTGCTCTTT TGGTGGAGACCATGTTGTAAAGATAAACATAACTGGGTACTCTTTAAGGGGATTTCTTGCCCCGGAATTGGGTCAGATCAAATTTTTGCAACAACTAATC TTGCACGGTAATAATCTGATTGGGATTATACCAAAAGAACTGGGAATGTTGAAATACCTCCAGGTCTTGGATTTGGGAGCAAATCAATTAACGGGCCCTA TTCCTCCAGAGATTGCAAATCTAATCAGTGTCATTAAAATAAACCTTCAGTCCAATGGATTAACAGGAAGCTTGCCTCCTGAACTTGGCAATTTGAAGTC CCTTCAAGAACTACGGCTTGATAGGAATAGACTTCAAGGATCTGTTCCTGCTAGTAGCAGCTCAGATTTCACTTCTAGTGCGTATGGAATGTATGCCTCA AACACAAACTTAACTGGCCTGTGTCAAGCATCTGAATTAAAAGTGGCTGATTTCTCCTACAACTTCTTTACTGGGAGCATTCCTAAGTGCTTGGGGTATC TTCCGAGCACAAGCTTCCAAGGGAACTGCCTTCAGAACAAAGATCTGAGACAGCGTTCCTCTTCTCTTTGTGATCATGCTCCTCCTGCCAGAACCCCTCA AACAACAAACCCCAAGCAACAGCCTGCTGAAGATTTATCCAACCAGCATCCTAGGGCATCAAAACCTGCCTGGCTTTTGGCTCTGGAAATAGTGACAGGA ACCATGGTGGGCTGTCTCTTTCTTATCGCCTTTATAACTGCTCTTCAGAGATGCAAGGACAAATCTTCTCTCATAATCCCTTGGAAGAAATCATCGAGTC AGAAGGACCATGTGACAGTATACATAGATTCTGAGATGTTAAAAGATGTAGTGAGATTCAGTAGGATGGAGCTTGAAGTAGCCTGTGAAGACTTCAGTAA CATTATTGGCTCTTCTCCAGACAGTTTGGTTTACAAGGGCACTGTGAAAGGTGGCCCTGAGATTGCTGTCATATCCCTCTGCATCAAAGAAGAACACTGG ACAGGCTATCTTGAACTCTATTTTCAGAGAGAGGTGGCAGATTTGGCAAGATTAAATAATGAGAATGCAGGAAAGTTGCTGGGCTATTGTAGTGAGAGCA CTCCATTTACGAGGATGTTAGTTTTCGAATATGCATCAAATGGAACCCTGTATGAGCACCTTCACTATGGAGAAGGATGCCAGTTAACTTGGACACGGCG CATGAAAATCATTATAGGCATTGCTCGTGGACTGAAGTACTTTCATGCTGAACTTGATCCACCTTTTACTATATCAGAGTTAAATTCCAGTTCTGTGTAT CTCACAGAGGACTTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGAGTATTCTTGCAAGATCAGAGAAGAACTCAGGCTCCATAGGCGGCCAAGGTG CTATTTGTGTGCTTCCAAATTCTCTGGAGGGACGCCATCTCGATGTCCAAGGGAACATTTATGCTTTTGGTGTTCTATTATTGGAAATAATCAGCGGAAG ACCTCCACACTGCAAGGACAAGGGGCGCTTAGTAGATTGGGCTAAGGACTTCCTCGAACTACCGGAAGCAATGGCGTATGTGGTGGATCCCGAGTTGAAG CATTTCAGATTCGAGGACCTCAATGTTATATGTGAAGTGGTAAACCTTTGCATCCATCCAGACCCCGCTAAGCAGCCTTCCATGCAGGAGTTAAGTACCA TTCTAGAGAGCAGAATTGATACAACTATACCTGCCGACTTCAAGGCATCTTCTTTGGCATGGGCAGAGCTTGCGCTGTCATCATAA
AA sequence Show only first row Show all	>Potri.001G106600.1 pacid=42788729 polypeptide=Potri.001G106600.1.p locus=Potri.001G106600 ID=Potri.001G106600.1.v4.1 annot-version=v4.1 MRSYASLQLLSVFSLLLFVTCDPFARDEVWALTAFKEAIYEDPHMVLSSWNALDADPCGWSGISCSFGGDHVVKINITGYSLRGFLAPELGQIKFLQQLI LHGNNLIGIIPKELGMLKYLQVLDLGANQLTGPIPPEIANLISVIKINLQSNGLTGSLPPELGNLKSLQELRLDRNRLQGSVPASSSSDFTSSAYGMYAS NTNLTGLCQASELKVADFSYNFFTGSIPKCLGYLPSTSFQGNCLQNKDLRQRSSSLCDHAPPARTPQTTNPKQQPAEDLSNQHPRASKPAWLLALEIVTG TMVGCLFLIAFITALQRCKDKSSLIIPWKKSSSQKDHVTVYIDSEMLKDVVRFSRMELEVACEDFSNIIGSSPDSLVYKGTVKGGPEIAVISLCIKEEHW TGYLELYFQREVADLARLNNENAGKLLGYCSESTPFTRMLVFEYASNGTLYEHLHYGEGCQLTWTRRMKIIIGIARGLKYFHAELDPPFTISELNSSSVY LTEDFSPKLVDFESWKSILARSEKNSGSIGGQGAICVLPNSLEGRHLDVQGNIYAFGVLLLEIISGRPPHCKDKGRLVDWAKDFLELPEAMAYVVDPELK HFRFEDLNVICEVVNLCIHPDPAKQPSMQELSTILESRIDTTIPADFKASSLAWAELALSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	0	1
AT1G77680			Ribonuclease II/R family prote...		Potri.005G174800 [exp]	1.00	0.8769
AT2G24230			Leucine-rich repeat protein ki...		Potri.006G185100 [exp]	4.79	0.8391
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	5.47	0.8765	PGP1.2
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	10.58	0.8433
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	12.24	0.8152
AT3G53540			unknown protein		Potri.006G213700 [exp]	15.29	0.8503
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.006G071000 [exp]	16.52	0.7727
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.015G104700 [exp]	17.57	0.8693
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	22.73	0.8484	PCBER7
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	24.33	0.8264

Compare expression of checked genes

Potri.001G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.