Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63300 609 / 0 Myosin heavy chain-related protein (.1) AT5G41140 507 / 3e-164 Myosin heavy chain-related protein (.1.2) AT5G52280 244 / 6e-68 Myosin heavy chain-related protein (.1) AT1G22060 65 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124600 [exp] 1278 / 0 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 387 / 2e-119 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 386 / 1e-117 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 64 / 7e-10 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 61 / 5e-09 AT1G22060 1031 / 0.0 unknown protein Potri.006G120400 [exp] 52 / 3e-06 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 49 / 2e-05 AT1G22060 117 / 5e-26 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024517 [exp] 333 / 3e-98 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 334 / 8e-98 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 307 / 6e-90 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 298 / 1e-86 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10001481 [exp] 298 / 2e-85 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10027462 [exp] 290 / 7e-84 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10008012 [exp] 292 / 1e-83 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001482 [exp] 263 / 1e-78 AT1G63300 298 / 5e-92 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 248 / 3e-69 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 63 / 1e-09 AT1G22060 985 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G106700.4 pacid=42793519 polypeptide=Potri.001G106700.4.p locus=Potri.001G106700 ID=Potri.001G106700.4.v4.1 annot-version=v4.1 ATGCATTGGCTATATCAGTGGTTCCGAGAAGAAAGTTGTCGATGGGAGTATCCGGTCTATGAAACAGTGAAATACATTCGTGATGTGAAAACAGGGAAGA TCAATGAGAGAATATACCATTTTGTTGTCTCCACTGATGGACCACTTATCAATGCATCTCACAATTCTGGATTAAATGGCAATGACAGGACTTCTAGTGG ATCTGACATTACAATGTCAAGTTCTGAAAGTCGCTCTGGACTCAATACCCCACGAGAACTTGGATTGAGAAACAACATGCTACAGGACCCTACTAGCTTT CTATCATCTCGAACCCGCACTTCAGCATCTCTCCTGCCAAAAGCAAATGCTTCCGCAGCAAGCTATGTGGAGCATCAGCAACCACAATGGGAGTTATCCG CAGAGTCTGCTCATGATATAAGTAATTATGACTCGACAAATAGTTCTCAAGGCTCGTTTGCAAGAGAGAGATCTCAACAGGCTTCAGATATTGAGATGGA AAAACTCAAGTCTAAACTCGTTGTGTTGTCAAGACAGCAAGATGTGTCAGAGTTGGAAATACAAACCCTGCGGAAACAAATTGTAAAAGAGAGCAAAAGG GGGCGGGACCTCTCCAGAGAAATCTTGGGATTAAAAGGGGAGAGAGATATGCTCAAGTCAGAGTGCGAGAAACTCAAGGCATTTCAGAAATGGATGGAGG AGGCAAAAAGCAAAAACAAGTTACCTTTCAAATGTGGGGATCCATTTCTTGAAGAAGTTCGACGAGAGCTGAATTATGAGAAGGACCTGAATTCCAACCT CCGGTTACAACTTCAGAAAACGCTGGAATCAAATGCTGAGTTGATACTTGCTGTGAAAGACCTCAATGAAATGTTAGAGCAGAAAAGTAGGGAAACATCT GACCTTTCCAACAAAGCAAGATCCTATGAGAATGCAATCTCAAGAAGTAAGACTGGTGATGATGAAGAGCAAAAGGCACTGGAAGAACTTGTTAAGGAGC ATAAGGATGCTAAAGAAACGTATTCTCTGGAGCAAAAGATTATGGACCTCTGCAGTGAAATAGAGATCTATAGGGGAGAGAGAGATGAGCTGGAGATGCA AATGGAGCAGCTGGCACTCGACTATGAGATATTGAAGCAGGAGAACCATGACATGTCATATAAATTAGAACAAAGTCAGCTGCAAGAACAGCTGAAGATA CAGTATGAATGCTCCCCTTCGTTTCCCAACACAAATGAACTAGAAGCTCAGGTTGAGAGCTTAGAAAATGAACTAAAGAAGCAGTCAAAGGAAAACTCTG ATTCTTTGACAGCCATAAAGGAACTACAAACCCATATAAAGAGCCTGGAGAAAGAATTGGAACAGCAGGCCCAAGAGTTTGATGCTGATCTGGAGGTCGT AACAAGTGCAAGAGTTGAGCAGGAGCAGAGAGCCATTCAAGCAGAGGAAGCCTTGCGAAAGACAAAATTGAAAAACGCTAATACAGCTGAGAAACTGCAA GAAGAATTTAGGAGGTTGTCCATTCATATGGCCTCAACTTTTGATGCAAATGAGAAGGTAGCTATGAAAGCGCTTGCAGAAGCTAGTGAACTACATATGC AGAAAGGAAAACTGGAAGAAATGCTTCAGAAAGCTAACGAGGAGCTCCAATCAGTTAAGGATGGTTATGAGTCAAAACTGCATGTTCTTTCCAACCAACT GAATTTGAAAATGCATCAGATAGAACAGATGTTGATGGAAATTGAGGATAAATCCAGACAGCTTGAACAGCAAGAGAAGCATGATGAAGAATGTGTTGGA GCCTTCTCCCATGAAATCCAAGGCCTAAAAGCTGAGCTTGAAATGCTCTCAATAGAAAACAATCACCTTTCTGAGCAAGCAGAACAGAAAGAAAATATGA GTTTAGAGGTGGAACAAATGAAGACATCAATTAAGCACACTGACGCGCTGGTACAAAAAGGAAATATGAAACGGAATGAACTGGTGAGTACAATTTCTTT GTTGAAGAAGGAAGCAGAGAAGTCGCAGGAGGAGTTAAATAGAATGAGGTGTCTCAAGGATGAGAAGGAGTCTGCAGTGAGTCTCTTGCAATCAGAGGTC AGAATGCTTAAAGCTCAATGTGATGACTTGAAACATTCTCTGTTTGAGGATGAGTTGGCAAAAGAAAAACTTAGAAGGCAGTTACTCCAATTAAAGAGTG AGCCGAAGAAGAAGGAAGATGCTTTGACCAGCATGGAGAAGAAACTCAAGGAAAGCAACAAATGCATAGCAGTTTCTGAAGGAACAAAAAGTACCATGAG AAACAATAAGTTTGCTCCAGTTCCTTATGGCTCTAAAGAGATGGCAAATCTGAGGGACAGAATAAAATTGCTTGAGGTACAAATAAAGTTAAAGGAAACT TCTCTAGAAGCCTCTGCAAATTCGTTTTCAGAGAAGGAAAGGGATCTTCAAAACAAAATTGAAGAGTTGGAGGGCAGGGTGGAAGAACTCAACCAGAACT GCGCATGTTTCTGCTGCAACCAACTCCGAAAGTCATCTGAAGACAACATTGGGATTACTCCAAATGGTGATATAGCTGAAGATTTAAGCAGGGATGAAAA TCCAAGCAGTAGTACATCAGGGATGTCCAAAGAAAATGGGAATTTAAAACTGTCAATCAAGAGCGATCATTCCAGTGCATCGGAGTTAGAACCAAAAACC TGCTCTGTCAACAACACGGACCACAATGCCAATGAGGAGTTGGGTGAACTAGAGTCATTGAAGGAGAGAAACAAATCAATGGAAAATGAACTGAAGGAGA TGCAAGAAAGATATTCGGAAATGAGTCTCAAGTTTGCACAGGTAGAAGGTGAAAGACAACAGCTGATGATGACGCTACGAAATCTTAAGAATGCCACTGC CAGGAAGACCTGA
AA sequence Show only first row Show all	>Potri.001G106700.4 pacid=42793519 polypeptide=Potri.001G106700.4.p locus=Potri.001G106700 ID=Potri.001G106700.4.v4.1 annot-version=v4.1 MHWLYQWFREESCRWEYPVYETVKYIRDVKTGKINERIYHFVVSTDGPLINASHNSGLNGNDRTSSGSDITMSSSESRSGLNTPRELGLRNNMLQDPTSF LSSRTRTSASLLPKANASAASYVEHQQPQWELSAESAHDISNYDSTNSSQGSFARERSQQASDIEMEKLKSKLVVLSRQQDVSELEIQTLRKQIVKESKR GRDLSREILGLKGERDMLKSECEKLKAFQKWMEEAKSKNKLPFKCGDPFLEEVRRELNYEKDLNSNLRLQLQKTLESNAELILAVKDLNEMLEQKSRETS DLSNKARSYENAISRSKTGDDEEQKALEELVKEHKDAKETYSLEQKIMDLCSEIEIYRGERDELEMQMEQLALDYEILKQENHDMSYKLEQSQLQEQLKI QYECSPSFPNTNELEAQVESLENELKKQSKENSDSLTAIKELQTHIKSLEKELEQQAQEFDADLEVVTSARVEQEQRAIQAEEALRKTKLKNANTAEKLQ EEFRRLSIHMASTFDANEKVAMKALAEASELHMQKGKLEEMLQKANEELQSVKDGYESKLHVLSNQLNLKMHQIEQMLMEIEDKSRQLEQQEKHDEECVG AFSHEIQGLKAELEMLSIENNHLSEQAEQKENMSLEVEQMKTSIKHTDALVQKGNMKRNELVSTISLLKKEAEKSQEELNRMRCLKDEKESAVSLLQSEV RMLKAQCDDLKHSLFEDELAKEKLRRQLLQLKSEPKKKEDALTSMEKKLKESNKCIAVSEGTKSTMRNNKFAPVPYGSKEMANLRDRIKLLEVQIKLKET SLEASANSFSEKERDLQNKIEELEGRVEELNQNCACFCCNQLRKSSEDNIGITPNGDIAEDLSRDENPSSSTSGMSKENGNLKLSIKSDHSSASELEPKT CSVNNTDHNANEELGELESLKERNKSMENELKEMQERYSEMSLKFAQVEGERQQLMMTLRNLKNATARKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63300			Myosin heavy chain-related pro...		Potri.001G106700 [exp]	0	1
AT5G26910			unknown protein		Potri.013G010500 [exp]	2.44	0.8966
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	2.82	0.9024
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	5.83	0.9060	KOR1.2
AT5G11560			catalytics (.1)		Potri.018G039800 [exp]	7.74	0.8741
AT3G16200			unknown protein		Potri.001G186200 [exp]	7.74	0.8902
AT5G39380			Plant calmodulin-binding prote...		Potri.017G090200 [exp]	16.00	0.8817
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G118700 [exp]	16.12	0.8913
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	18.89	0.8829
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.002G165500 [exp]	25.27	0.8221
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.015G082700 [exp]	34.46	0.8815

Compare expression of checked genes

Potri.001G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.